Array 1 41980-40425 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDD01000001.1 Thermotoga sp. SG1 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 41979 29 80.0 35 C.G.A.-...T..........G........ ATAGGCACATTTAATCAGCGTTTCAGAAAAGGAGA 41915 30 100.0 36 .............................. CATGCTCAACTCCCTTTCCCCGCAAAACGAACCCAT 41849 30 100.0 37 .............................. CAAAAAGTTCATCGCGTGGGGGTGAGAACATGATTCC 41782 30 100.0 37 .............................. GATTGTGGGAAGGGGGGATGGTTAGATGGCTATTACA 41715 30 100.0 37 .............................. TTGACTGGAAGCCCCTTTCAATGTCACCGCAGGAATT 41648 30 100.0 35 .............................. AGGGCTTGCTCGAGGATTTGGATTCTGATCTCAGG 41583 30 100.0 36 .............................. CTTTCTCGACTGCTCAGATGCCGAGGACTATATCCT 41517 30 100.0 36 .............................. ATGCCAAACTTATGCCGAACTACGCCGAAGCAGTAG 41451 30 100.0 36 .............................. TCATAGACACAAGCGGAAGTATCTCCGCCGGGGAGT 41385 30 100.0 37 .............................. AAGGAATCTTTGCTACTGGAAGTCACACAAGAGGACA 41318 30 100.0 37 .............................. TTGAGGATCCAGAGGAGGATACATATTATATAGACAC 41251 30 100.0 37 .............................. GCAAATTTGCGCAGAAAATACCGCAGTGGACAACGGT 41184 30 100.0 37 .............................. GGTACCCGCTTTTTTTATTCTTGCCCCTTCTGTTTTT 41117 30 100.0 36 .............................. TCTACTTCTCTTTCTAACTGCTCTCTGGAGTATATG 41051 30 100.0 37 .............................. ATCACCAGGTACAACAGGCAACCGGCGGGAAATATGA 40984 30 100.0 37 .............................. GTGTTCATACTCAACTCCAAATACGGTCACGACTGGT 40917 30 100.0 36 .............................. CTGTTGTGCAAGACCTTCAGCTTTTTGTTTGTCACC 40851 30 100.0 36 .............................. CAGAATACGAGGAGTATCAGATTGGGAAAGTACTAT 40785 30 100.0 34 .............................. GGGGGACATCTGCCAAAAAATGTTCCCTCTTTGG 40721 30 100.0 36 .............................. TCCTCCCATTCTTCAAGCTCGGGGTATGCAAAAATG 40655 30 100.0 37 .............................. ACTTGAGGAGGTAGTAGAATGGGTAGAAGAAGCAGAA 40588 30 100.0 37 .............................. TATAATGATCGTTCTTCGATCTTTTTGGAAGCGCAAG 40521 30 100.0 37 .............................. GTAGGTGGTGTTACCAAAACCCTCTTTCCATTAATGT 40454 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.2 36 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : TCTCTTCGACAATTTGAGAAACTCTTTTTCCTGATTCTATCTCAATTCCCTTGGAAAGATTCAACACCATGTATGGTTTCACAGAAAGTTTGTTAAGGTACTCTCTTACGTGTTGTACAGGTGTGGCAATAACCAGAATATCGCTACTTTTCAGTTCTTCAAGATCGTTCGTTGCTCGAACAGTGATTTTTAACCCTTCGAGATAGGGACTTGTATGATAATTGTTTATCAAATCCGCAATTTCTCTTCTTCTTGCCCACAACACCACTTCTTCGTTGTTTTCCTTCAACATCTGTGCAAAAACCGTTCCCCAACTCCCAGCACCGAGGATGAAAAATCTCATCTTATATCCCCCTTGAATGCTTTTTTCTCAAATTTTAGCAAATTAATGAAAAATGAGGGAACCATAAGGAGTATAGAAACATTGAAATGAAACCGAAAGAAAAGCGTTTACATGCATTATCGAAACACAGTGCAGCAAGCGAAAAAAAGGTGGGACT # Right flank : CCATTGGATTTCAAAGAAATTATACCACAGAACATATCAGAAAGCAAGAGTATATAAGAAGATAGAGAGGGTGTTTCATCATAAGTGATTCTAACACACAGAAAGGGTCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAGCCTAAACCATAGCAAAAACAAAAGATAAATTACCCTAACCTAGGTCAGGCCATTTTGGGGTGTTTCAGGGGAAAATCAACTAGTTCTTGTTTTCACAAATTCTCGTAAAAAGGTCTACCTTAAAGTGTTAAAGGATAAGTATGTCGCTTCTTTATTTGTCGTCAAATCATAAGTTTATGTTCAAGTTATTTCTGAGTAGTTGTTTTCCTTTTTCGCTCATTATTCCTTTTTTATTGCATAGCTTCCGGTACCACAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCTCCTTTCTAATGCTAAATACAAACATACCCTACTTTGTGAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 82531-84215 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDD01000001.1 Thermotoga sp. SG1 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 82531 30 100.0 36 .............................. AAATCCGCCATATTCTCTTTGAAAAAGGTGGCGGCA 82597 30 100.0 35 .............................. GAGGGACCCAGAGTATTTCTAGCAATTGGAGATCC 82662 30 100.0 37 .............................. GAGACGGATTCATCGTCGGAGAAGGATACGGAAGCTG 82729 30 100.0 34 .............................. TCACTCCATCCTTTCGAGGCTCCCAGTTTCGCTT 82793 30 100.0 35 .............................. CTGATGCGTGTGGGCTGTGAGGTAGATATCGCCGT 82858 30 100.0 40 .............................. CGCTACTGGAGGGCGCATTGGAACTCGGCATCCTGGACGC 82928 30 100.0 38 .............................. GCTTATGCGGAAAGCGAATTAAAAAGATATGCTTCAGG 82996 30 100.0 36 .............................. ATTGAGAGGAGGTGAGTGACATGAGGAACGAATTTA 83062 30 100.0 37 .............................. GCATCCCCGGCTTTTTTATTTTTGCACGTTCAGTTTG 83129 30 100.0 36 .............................. CGTCTACACCTGAGGAGCCCGTCAAGGTTTTGTCTG 83195 30 100.0 36 .............................. GTCGTCAATTGGGCAAAGGACCTTTATTATTCCTAT 83261 30 100.0 36 .............................. GTTTTTCCTCGTGACGGTCCCTTCGTGGTTGGGATA 83327 30 100.0 35 .............................. CTGACCTGTTCTTCCGTGCTTTTTGCGATGCCTTT 83392 30 100.0 35 .............................. AATTGCAAGACAGCGCGGTTGGATAAAAAAGAAAA 83457 30 100.0 36 .............................. CGTAAAGCACTCCGCCTTCCCAAGTTTCCAAATTTT 83523 30 100.0 36 .............................. AACTTCGTCAAGCGCGGGGTATGAAAAAACATAAAA 83589 30 100.0 36 .............................. CGGGAGGGTTTATTCCCTCCCGCGTTTGTTTTTTGT 83655 30 100.0 37 .............................. TTGTTGTAGCTTCAACAGGTTCAACTGTTGTTGGGTA 83722 30 100.0 36 .............................. TCATCCTCGATTCAAGGTATTATACCCCGAAGGAGG 83788 30 100.0 37 .............................. TCATTCAATCCCTCCCTTATCGTTCTTGCCTATATAT 83855 30 100.0 35 .............................. AGACTATTGCGGGAAATGGGGTTGGGGTACAACTA 83920 30 100.0 36 .............................. CACCCAAGGATTACAAGAAGATCATCGGTGAGCATG 83986 30 100.0 35 .............................. AAAGTGGAACTGAATCTCTTGTGCAAGTCTCGATT 84051 30 100.0 39 .............................. GGGAAAACTCCCCGGTTTTCTTTTGTCCCACCTTTTTTG 84120 30 100.0 36 .............................. TCTGCGAGTCTCTCAAGGTCGACACGGTCAAGAAGA 84186 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 26 30 100.0 36 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : TCAGAATTCTCCTTGAATTTCTCGTGGAAAGTGTTGTTATCACCTTCGTTGCAGGTGCTATAGGGGTTGCCCTTGGAATACTCGGATCAAACACGATTGTCAACACCTTTGGAAGTTCCTATGGATTGAAAGCCTTCATAGATCCCATCTCTGTGATCATTGCCTTTGGTGTCTCCGCAAGTGTTGGTTTGTTTTTTGGATTCTACCCTGCATACAGAGCTTCCAGATTGAGTCCAATAGAGGCTTTAAGGTACGAGTAACAACCTTTTCCCTGCACCTCATTGGGTGCAGGGATCTTCTTTTTCCACTGAAGGATATTCAATCTTCAAGTGTTCCCACCTTGTTATGGAAAACTTGCAATGTAGGAAAAGTTTCCATATTTCCAAGGTATGGTTGAAACAAATCACCAAGAACGACTTGGTGTTCTGGGATTTCTTGCTTCCGTACCTTTAGAAGGATTGAAACAGAACCATAAATTGCCGGAAGGATGTAGGCTTGTG # Right flank : CCCGTTGGATTTCAAAGAAATTATACCACAGAACATATCAGAAAGCAAGAGTATATAAGAAGATAGAGAGGATGTTTCATCATAGGTGATTCTAACACACAGAAAGGGTCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAGCCTAAACCATGGCAAAAACAAAAGATAAATTACCCTAACCTAGGTCAGGCCATTTTGGGGTGTTTCAGGGGAAAATCAACTAGTTCTTGTTTTCACAAATTCTCGCAAAAAGGTCTACCTTAAAGTGTTAAAGGATAAGTATGTCGCTTCTTTATTTGTCGTCAAATCATAAGTTCATGTTCAAGTTATTTCTGAGTAGTTGTTTTCCTTTTTCGCTCATTATTCCTTTTTTATTGCATAGCTTCCGGTACCACAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCTCCTTTCTAATGCTAAATACAAACATACCCTACTTTGTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 419846-421939 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDD01000004.1 Thermotoga sp. SG1 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 419846 30 100.0 35 .............................. ATAAACAGAGTTACAACCTTCATCAGACTTATGAG 419911 30 100.0 37 .............................. TGGTCATGCAGAATGGAACAGAACCACATCTTGCTTT 419978 30 100.0 36 .............................. TTCCTGGACCTAAAGAATAGTTATCATCTGTTTGTG 420044 30 100.0 34 .............................. CAGCAGCATTCTATCACACGCGACTGCGAAGCAG 420108 30 100.0 36 .............................. ACAAAGAGGAGCGGTTTGGCCTTATCCTCGGATGGT 420174 30 100.0 36 .............................. TAGGTCTTCTTGTCTATCTTCCCGAGCCCAAGCCGG 420240 30 100.0 37 .............................. CAAAATACACCGCAGCTATGGTTGCACACAAAACCTT 420307 30 100.0 35 .............................. CCATCATCCCCTCAAAAAGAGAGAGAGAGGAATGT 420372 30 100.0 42 .............................. TCGTACACCTAGATAATGGAACCGTCAGAGTAGTGTTCGAAA 420444 30 100.0 36 .............................. CGGTATCGATTCGGATGCCGTCACAGGACTCTACGT 420510 30 100.0 37 .............................. GAAATGATAGTACCCTACCCATCGGAAGTATCTATTT 420577 30 100.0 36 .............................. TAAAAGAAGTGACAACGTTGAGAGGAGGTGTGATGA 420643 30 100.0 36 .............................. TAGCTCCCGGCTTTTTATTTTTGCACGTTCAGTTTG 420709 30 100.0 37 .............................. AAAGGATTGTACAGGAGGAGCTGAGAAGATGTGCTCG 420776 30 100.0 36 .............................. ATAAAAAAATTTTTAGAAGAAATGAGGAGGATGAGA 420842 30 100.0 37 .............................. AAACAGCGCGAAAGAATTGATGAAATTCAAACAGATA 420909 30 100.0 35 .............................. GAGGTAGAAGATATTTTCGAAAACTTCAACTGGCA 420974 30 100.0 37 .............................. TTATCACCTGGAACGACGATGGGCTGGTATTTGGGAT 421041 30 100.0 37 .............................. TTAGACGAGCTAACAACGAACAAGGGAACGGAAACGG 421108 30 100.0 37 .............................. CTTGTACAGATGATCATCTGGGGAGGTGTGAATATTA 421175 30 100.0 42 .............................. CCACCTCGTCCGGGCGGGGGAACATGTACTCCCGCCCGGCTA 421247 30 100.0 36 .............................. ACGCTTGCTCTTACAGCGCCTGTCGGCACAGACACA 421313 30 100.0 35 .............................. CTGGTAGAGCTGCTTAAAGCCGTCTCTTCGTCTTT 421378 30 100.0 36 .............................. AAGCCTTTCTTTACAAGCTCATCCCCTTCAGTATAC 421444 30 100.0 38 .............................. TCAAGAACATCAGCAATACGAGATATGTCGTCGAAGTT 421512 30 100.0 37 .............................. GGAGGCATCATAGTCGTTGTGCTTTTCTTTTCGTGGT 421579 30 100.0 36 .............................. GCGCCGTCACCTGCACGTCAGCGTCTGTCGGATTTA 421645 30 100.0 37 .............................. GCGATATCTTTTATTGTGTCTATATAGGCATCATAGT 421712 30 100.0 37 .............................. CTCAGAAAATCACTCCAGAACAGGCAAAGGAGGTGTT 421779 30 100.0 35 .............................. CTTCCTTAGAGGTATGGAAACCGGCAAATAAATGT 421844 30 100.0 36 .............................. GCGTCCGGCTACACTTCTCCGCGAGAGAGAATTTAT 421910 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 32 30 100.0 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : CATCGGTGATGGCCTTGTTACAGTGCTTCAGGGATTTATAATTCTGTTTTTCACGTACTTTCTGGCAGAGAATCTGAAAGTCTCCGGTCTGATACCAGCTCTCATCGTAGGTTTTCTCATGTCCGTTACGATCGCCGGTTTTGGCATAGCACTCGCCCTGAAAATGGAAAGCACAGAGGGTTTTCAGATGATAATGATGACACTGATGATGCCTTTGATATTTTTGAGTGGAGCCATGTATCCGATAGACTCCATGCCGAACTGGATGAAAGCGATCGCCTACATCAATCCACTAACATACGCAGTCGATGCCTCAAGAGGTTACTTGGTTGGATCCCACGTGATGAAGTTTTCCTTTGGAATGGACTGGGGTATTTTGAGTATACTGATGGTCGTGGGACTTCTTCTTGCAACAGAGAGTTTCGAAAGGGCAAGGATAAATTGAAAGTTATAAAAGCACCAAAGGCAGGGATCTTCCCTGCCTTTTTGTTTTTTACGAA # Right flank : CCGTTGGATTTCAAAGAAATTATACCACAGAACATATCAGAAAGCAAGAGTATATAAGAAGATAGAGAGGGTGTTTCATCATAAGTGATTCTAACACACAGAAAGGGTCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAGCCTAAACCATAGCAAAAACAAAAGATAAATTACCCTAACCTAGGTCAGGCCATTTTGGGGTGTTTCAGGGGAAAATCAACTAGTTCTTGTTTTCACAAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 40667-39153 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDD01000002.1 Thermotoga sp. SG1 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 40666 30 93.3 37 A.G........................... TAGCTCCAGAAATTGCAAGATTACTTCAACGATGCTA 40599 30 100.0 40 .............................. ACATACACTTGATGATTAACCCATGCCCACCACGCCCCAA 40529 30 100.0 37 .............................. GTGTGGTTTCAGTTCTATTCACGGGTACGTCTACTCC 40462 30 100.0 37 .............................. AAAACTTCAACTGGCACAACGAAGATTATGAATATAT 40395 30 100.0 39 .............................. ATTCCTCTATAATGTGTGATATCGGTGTTTCTAATAGTG 40326 30 100.0 36 .............................. TGGGAAAGCATATGCTAGGGATCTTGGAAAATGCTA 40260 30 100.0 37 .............................. TAAACGAACTGGCAAGACTGACAGACTCCTCAAGGGA 40193 30 100.0 37 .............................. CCCCCGACGACACAAACGACGATGTCTCCTTCTTCGA 40126 30 100.0 37 .............................. CTCGTGCGTCTTGTATTTCTGATAGTTCTTTTATCTG 40059 30 100.0 36 .............................. TTGGAGCAGCTTGCGCTTCTATCTTTACACCACCAA 39993 30 100.0 37 .............................. AAGTTACATCACTATCACAGGGTATAGGGCTTCTGTT 39926 30 100.0 40 .............................. AAGATGCGGGCTATTTAGATGGTGAAGGATGGGTGGAAAT 39856 30 100.0 38 .............................. ACTTTCAAAACGCCCATCCTAAGCCGGTTTCCGATATC 39788 30 100.0 36 .............................. TTCGCAAGGATATCGGCTATCTCATCAGACAAAGTA 39722 30 100.0 36 .............................. TTTTGGAACCGAACGAAGCGGAGGTTTAATAATCTT 39656 30 100.0 36 .............................. TATATATTTTCTTAGTGTACTATATTCCCTGTTAGA 39590 30 100.0 36 .............................. ACTTGAGCTTACAAACAAGAATAATATCTCCATCAC 39524 30 100.0 38 .............................. GTTCCCAGTCACTTGCACGTCACCGTCAGTTGTATTAA 39456 30 100.0 37 .............................. AAGGAATCTTTGCTACTGGAAGTCACACAAGAGGACA 39389 30 100.0 38 .............................. GAAAAAAGAATTCAGGAGAATTTACAGAAAACAGCTGT 39321 30 100.0 42 .............................. CCAAACCCTGTTCTCTGAGTGCTTGCAAAATTTGATTACCGC 39249 30 100.0 37 .............................. TTTGATCGTAATAGATAATCATTGAGTAGGGTAAAGA 39182 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 23 30 99.7 38 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : TATTTCAAAAGTTCTTTGTGCAGAGTCTTTATCTTTATCTTTTTTCTCGGGCAAAAATTTCATTGTAGGAGAGGAAGACACAGAAAAATTCCCACGCTGTTTTCTGTAGAGAAAAACCTTTGAACTTTTCCCTCCAGGATTTTTCTGAACAGGTACGATCCCTTTGAAAATCAAGCCGTTTGGCGTGGTCTCAAGAGAGATGACAAGGCCTTCTTCCTCAGGAACTTCTTCAGCGAAATCGGAAAAAGAACTGGTCTGAGTTTTTCCAAGATCATAGATTTTCTTCAACATCTCGATCCCCCCAGTAAATTCTTTTCAATGAACCAGCTCTGTTTGTATTGTTTGCTGTTTTAACCTTTCGTTTTCGAACAATTCCACCCAGTCTTTGAAGTTTTTCGTTTTCGTCTTTGTTTCTATATTTTTAGGCACATTTTCCGCCAAAAAGTTCGGTGCCTATACCCAAAAAGGAAGGATTGAGGCTACCCTCCTTCTTATCGACA # Right flank : CCGTTGGATTTCAAAGAAATTATACCACAGAACATATCAGAAAGCAAGAGTATATAAGAAGATAGAGAGGGTGTTTCATCATAGGTGATTCTAACACACAGAAAGGGTCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAGCCTAAACCATAGCAAAAACAAAAGATAAATTACCCTAACCTAGGTCAGGCCATTTTGGGGTGTTTCAGGGGAAAATCAACTAGTTCTTGTTTTCACAAATTCTCGTAAAAAGGTCTACCTTAAAGTGTTAAAGGATAAGTATGTCGCTTCTTTATTTGTCGTCAAATCATAAGTTCATGTTCAAGTTATTTCTGAGTAGTTATTTTCCTTTTTCGCTCATTATTCCTTTTTTATTGCATAGCTTCCGGTACCACAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTATATCACACATCCAGTGCCAAATACAAACACATCCCACTTTGTGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 81287-78729 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDD01000002.1 Thermotoga sp. SG1 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 81286 30 100.0 36 .............................. AGGAGTTTATTCAGTCTCGGAAGTCTCTTCTGTCTC 81220 30 100.0 37 .............................. CAGCAACTGGACGAATCCATGTTTATGAATTCATGGG 81153 30 100.0 41 .............................. GGGAGTATCATGTCGAGAAGACTGTTCAACGCCCTTGTAGA 81082 30 100.0 36 .............................. CCGCCGCCAAGCTGACATTGTACACCTCATAGCCAA 81016 30 100.0 37 .............................. ATTCTTAGAACTCGTACAGGCTCCTCAGGTGTAGACG 80949 30 100.0 35 .............................. AAGAAAATTCACGACGGTGAAGACAGAGAGGAGAT 80884 30 100.0 36 .............................. GTTCTTACAGAAAGATATACAATTTTTCCTTGCAGT 80818 30 100.0 35 .............................. CAGGTACCGGGACGTTGTGGAGGAGGGATCAGAAA 80753 30 100.0 36 .............................. TATGCTTGCCCAAGCCGCTTTGGAAACGGGCTGGGG 80687 30 96.7 36 .G............................ CTTGTGCATTTGCGAGCATCTCGCTCCCCCGGAGAC 80621 30 100.0 38 .............................. GGGCGGGAACAGTCTCACACCACGTTTGTGAAGGACGT 80553 30 100.0 37 .............................. GAGTTGACGAAAAAAACAACGAAGTATTCGTTCCAAG 80486 30 100.0 36 .............................. TTTCCTCCACTTTTAGACTCGTATCCTCAAGGACTA 80420 30 100.0 36 .............................. TCACGCTCCCCATTACAAGCGATGCAAGAACAACGC 80354 30 100.0 36 .............................. TACTTACTCACCGCCTTCTTTTTCACCGTCCAGCTT 80288 30 100.0 36 .............................. TCTTGGTTTGTCCAAGCCCGATGTTCTGCACCACAC 80222 30 100.0 38 .............................. AAGGTGACTGTGAAGAAAATAGGCGAGCGTCTGTATGC 80154 30 100.0 36 .............................. GAATAAAAAGCCTTGAAAAGAGCTTTACAGAATACG 80088 30 100.0 37 .............................. CTCGAACATTAGAAGGAGCCACAACGGCAAACTTGAA 80021 30 100.0 35 .............................. CAGACAAACCCACCTTTTCACGTAGCTCCCTCAAT 79956 30 100.0 41 .............................. GGAAATGGATCATGTTTCTCTTGTCTTCAAGGGGTGGAACA 79885 30 100.0 37 .............................. TTGAAACAGTTGCTGAATTTGTAGCATCGTTCAGATA 79818 30 100.0 35 .............................. TTTCATTCACTCGCACAATCCCACGCACAAATATA 79753 30 100.0 37 .............................. TGGAAAAGGATTTTATCACTGAAGAGGGAGAGATTGT 79686 30 100.0 36 .............................. ACGACACGCTGCTTCCGATCCTGACCGAGCAGATAG 79620 30 100.0 36 .............................. TACGAGTCTAAAAGTGGAGGAAATAGATATAGTTGT 79554 30 100.0 39 .............................. GGGGTTCATTACTCACGAAAACCGAATCAGATTCATGGA 79485 30 100.0 36 .............................. TCGTGACCGTGGATGTTCCACCACCAATGACCACGG 79419 30 100.0 36 .............................. GGAGTGGAAAAAATTATTTCAAGAAATAGGAAAAAC 79353 30 100.0 36 .............................. ACTTGTTTTGCAGAAATTTCCACGGGTTATAGAATT 79287 30 100.0 37 .............................. ATGACGGAGTTGTCAGAATAACGTTCGAGATAACAAA 79220 30 100.0 34 .............................. GTGGTCGGTTGCGGGATTTCTTCAATCGCACCTA 79156 30 100.0 36 .............................. CGGCTGGAACGAAGTAGGCTGGAGAGAGGAGGGGGA 79090 30 100.0 34 .............................. TTGACAACGTGGCAAGATAGTGGTATAAAAAAAG 79026 30 100.0 36 .............................. TTGACTGGAAGTGGATTTTGATAGGAGGTGGTGTAA 78960 30 100.0 37 .............................. CACCTCCCCATAGCATGTTACTCATTGTATCACCTCC 78893 30 100.0 37 .............................. CTGTCTCAATAAGACCAATGACCAAGTCGTCACTAGT 78826 30 100.0 38 .............................. CTTGCAGAACTGATTCTCGAAGAGTTCAATCGTGTGCT 78758 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 39 30 99.9 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : ATTGCTTCTGTTGGACAAAGATTCATACATGTCTGACATGCAACCATGCAATTGTAAGGACATGCTACCATCACTTTCCCTTCTTTTCTGTCAAAGTCAAATACTCGCCTTCCACAAGTTACAAAGCAAATGCCACACGATGTGCATTTGTCGTAGTCGATGACTGGATACCACTCTATTGCTTTTCTATCTACACCCCACCAGGGAATTTTAGAAAGATCACGCACTTCTCGTCCAAGGACATCTTTTCCAATCACCGGAGTGTTCTTGGATTCCATTCCAATCTCCCTCCCAAGCCTGTTTTTTATCTTTTTGCAATAGGGAGGGAGCATTAATAACCACACCACCAACACCAGCACACTTTTCTCATGGTTTTCACCTCAAAGAAATTATATACATTTTGCATATATTTGTCAAATAAAAAAAAGAAACATCCTGGCTTGAAAAATTACTGGGAGTTCTTACCGAGAAGAGATTGAAACGAGGAAAGGAAAGATTCT # Right flank : CCGTTGGATTTCAAAGAAATTATACCACAGAACATATCAGAAAGCAAGAGTATATAAGAAGATAGAGAGGGTGTTTCATCATAGGTGATTCTAACACACAGAAAGGGTCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAGCCTAAACCATGGCAAAAACAAAAGATAAATTACCCTAACCTAGGTCGGGCCATTTTGGGGTGTTTCAGGGGAAAATCAACTAGTTCTTGTTTTCACAAATTCTCGTAAAAAGGTCTACCTTAAAGTGTTAAAGGATAAGTATGTCGCTTCTTTATTTGTCGTCAAATCATAAGTTCATGTTCAAGTTATTTCTGAGTAGTTGTTTTTCTTTTTCGCTCATTATTCCTTTTTTATTGCATAGCTTCCGGTACCACAAAGGCGCATGAAATTTTCCGTTACCGGTAATTGCATACTCTATATCACACATCCAGTGCCAAATACAAACACATCCCACTTTGTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 2231-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDD01000005.1 Thermotoga sp. SG1 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 2230 30 80.0 35 ....TT....A..A........G..A.... GTTCCAAGCAATTCAACAGATAGACCTAGCGAATA 2165 30 100.0 36 .............................. CGAGATCCTTGTCTACGCTCGTTCAAGCGAGTTCAT T [2156] 2098 30 100.0 36 .............................. AATTCGATCATCTCATTTCCTCCTCAATCGCCCGTT 2032 30 100.0 36 .............................. ACTGATACGTTTTACTGCAACCTCGCCAAGTTGCTG 1966 30 100.0 35 .............................. GTTCTTTCTGAGAAGGTAGTTGGTGTCGAGGACGA 1901 30 100.0 36 .............................. ATCCCTATGAGGCGCAGTCTTCGTTCTTGAAAGCGA 1835 30 100.0 38 .............................. ATAGGGAAAAATTTTAAGTGGTCCGATGACGGAAGGGT 1767 30 100.0 36 .............................. TTGTTAACACTTTTGTAACATTGCCCATAGTATATA 1701 30 100.0 35 .............................. ATGAACAGCGCAATGATGCCCGTAGAGGGGACTTA 1636 30 100.0 41 .............................. GCGAGGGAAATTTTCTGGTATCAAACTCCCACAGGAGGAAT 1565 30 100.0 42 .............................. TTGAAAATTGGGAATGTTTCTCAACTGGAGAATACGTAGAAA 1493 30 100.0 38 .............................. AGTTTTCCGCGAAACTGGCTCGAAATTGCTTTAGGAGG 1425 30 100.0 37 .............................. TAGAGGAGGTGTGGGAGTTGGTGAAAAACCTTCCCCA 1358 30 100.0 37 .............................. CTCTCTAGGAGTTCCCAGAAAGTTTTCACCTCCATGG 1291 30 100.0 37 .............................. AGCCACCGAGAGACTAGTTTCGCAAAAGCATTCGGAT 1224 30 100.0 36 .............................. GAAGGAAGGAAAGCCGAACGAATGTAGCGATCGTGA 1158 30 100.0 36 .............................. CATCAGATACAACGTTCAGCTATGGCAATTCAACGG 1092 30 100.0 36 .............................. AGTTGAAGAAACGTACAAGGAAACACCGTTTATATA 1026 30 100.0 38 .............................. CGGAAAGTTGGAACGAGAAAGGAAGGTTACAAGAAGAA 958 30 100.0 36 .............................. ACGCTTGCTCTTACAGCGCCTGTCGGCACAGACACA 892 30 100.0 35 .............................. CTGGTAGAGCTGCTTAAAGCCGTCTCTTCGTCTTT 827 30 100.0 36 .............................. AAGCCTTTCTTTACAAGCTCATCCCCTTCAGTATAC 761 30 100.0 38 .............................. TCAAGAACATCAGCAATACGAGATATGTCGTCGAAGTT 693 30 100.0 36 .............................. TTACCTTTTTGTATCTTTCATTTTACACCTTTCACG 627 30 100.0 36 .............................. CTGTGATTTGTATTTTCTCTGTTGTGTTCTGCTGTG 561 30 100.0 35 .............................. CCGATCTGGCATTTTGAGTATTGCTGGAGAACATT 496 30 100.0 37 .............................. TGTTCCGAGCGGGTGTAAGAATCGTACTTCACGATGA 429 30 100.0 38 .............................. AATCCGTTTCCATGTATCACTACACATTCTTCATTCAT 361 30 100.0 42 .............................. GAGGGATTGCGATGATCAAATTGGAATTGCGAAGAGACGCAA 289 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 30 30 99.3 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : AAAACGCCTGAGGAGATTTACGCCACGATCGTCAAAATAAGGAAGATTTTGAAACTCTACGATGTGGACAGTGCAGATGGTATCTTCAGGTCGAGCGATGGTAGTTTCAAAGGATACATCAGTCTGCCCGACCGATATCTTTCTAAAAAGGAGATAAAGAAACTCGCAGCGATCTCTCCGAACACGACCGTGAACATCATAAAGAACAGTTCCGTTGTGGAAAAGTACAGAATAAAACTGCCGCCTACCATATACGGGTTTGAAGAATTGCGATGCAAAAACGAAAACTGCATCACAAATCCTGCACACGGTGAGAACGTGTCCCCCTCGTTCGTGAGAGATGAAAACGGCCGATTTGTCTGCGAATATTGTGAAACTCCCCATTCGTTCGAAGAAATATGGAGCATTTGATCTCTTCTAAAAACAAACAAAGCGGGGATCATTCCCCGCTTTTTGTTTTTTGCTTTCATACCTTGCTTATCTCTGAGTGTCTGTACCTC # Right flank : CCCGTTGGATTTCAAAGAAATTATACCACAGAACATATCAGAAAGCAAGAGTATATAAGAAGATAGAGAGGGTGTTTCATCATAAGTGATTCTAACACACAGAAAGGGTCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAGCCTAAACCATAGCAAAAACAAAAGATAAATTACCCTAACCTAGGTCAGGCCATTTTGGGGTGTTTCAGGGGAAAATCAACTAGTTCTTGTTTTCACAAATT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 135732-137555 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDD01000005.1 Thermotoga sp. SG1 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 135732 30 83.3 35 A........AT..A...............A TCAATCTCTCGTGCTCTTCAGGGGGAGGGCAAATC 135797 30 100.0 37 .............................. TTTCCACGCAAACGACACAAAGAAAGAGGGAAGAAGC 135864 30 100.0 36 .............................. AAAAGAGGGGTAACACCGTTTCACTAAAGCCTACGA 135930 30 100.0 36 .............................. AAAGAGGAGGGTGATGAGGATGATAAGAGTGATTGG 135996 30 100.0 37 .............................. TATATCGGGCAGGTGTTTGGTGTGACTCTGGATCAGT 136063 30 100.0 41 .............................. TGAGTCGAAAGGAATCTTCAAGGATTCCACTCAAGCATGGG 136134 30 100.0 38 .............................. TTGAGTATGATCGAATCATTCGAACCGAATACCCTGAA 136202 30 100.0 36 .............................. ACAAGAAAATTCTAAAAGAGGGGAAGACTTCTATTT 136268 30 100.0 41 .............................. GGTGGCTAGAAGAAGCAGATATCGTTTTTCATCGTACCGAT 136339 30 100.0 36 .............................. CGAAGAAGACGCTTTCGAGTGGTGGTTGATAACTTA 136405 30 100.0 37 .............................. TTACAACGGTTGAAAACACCTGTTTGGAATGGAGCAT 136472 30 100.0 35 .............................. GAAGAAGAGATTCATAAACTCTGTAATCCAGAAGG 136537 30 100.0 37 .............................. TCGAAAGCGGATATGGCGACTTCTGTTATTATCTTAT 136604 30 100.0 37 .............................. TCTCGAACGAAAAGACGCTGTAGTTTATTCTCGCTCA 136671 30 100.0 35 .............................. AACTCTTCCAAGAACCCTCGTGCATTTTCGAGGAT 136736 30 100.0 36 .............................. TTGGGAAGGCGGAGTATTGTGGGGGCTCCGGGAGAA 136802 30 100.0 33 .............................. CTTCAGTCACAGTATATCCACTTGCATCAGGTA 136865 30 100.0 35 .............................. TAAAATCATTGAATTAATAACGGAAGGACTCACAA 136930 30 100.0 36 .............................. TATACTCTCGAGGGGCAGATCCGGAAGATGTTATGT 136996 30 100.0 37 .............................. GCATACACGGAAAAATAGATTACTCAAAAGAGGAAGT 137063 30 100.0 36 .............................. CTGGCACAGGAAAAACCACATTTGTAGGTCGTCTCT 137129 30 100.0 38 .............................. GGTCTCTTACAAACCAGTAAGGGTTGTAAGATATCTTG 137197 30 100.0 36 .............................. ATTTTTTCTAGAACTAAATGTAAATTAATATATTCA 137263 30 100.0 36 .............................. TCGAAGATCTTGAGGACTTCGAAACGGTCGAACCTG 137329 30 100.0 36 .............................. GGGGTAACGGTCGGGGAGGGAAGGGTGGGAAAAAAT 137395 30 100.0 36 .............................. TCTTTTTCTTTTTGCAACAATGTGGGGTTTGTGATA 137461 30 100.0 35 .............................. AATCGAGGTATTCTTTCTTTTGTTGCTGCTTCATT 137526 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 28 30 99.4 36 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : CTCTATCCAGAAACCTCTCCAGTTCTCTGGAAAATAGTTCGCAGTCTCTCACGCTCACGTATCCCACCGGGTTGTCTATCACGACCCTGAGAACCCAACCTCTGCTTTCTCTTCTGTACTGTATGTCGAAGATTTCCAGTCCTTGCTTTTCAGCAATTTTTTCCGCTTCTTTTCTAACCTTTTCTACAATCATCTCCTCGAACATACTATCACCCACCCCCTAGTGAACGAAAAACCGGGACACAAAGTCCCGGCCTTTCTCTGGCGGAGAGGGTGGGATTTGAACCCACGGGTGGCTTTTGGCCACCACACGCTCTCCAGGCGTGCGCCTTAGACCCCTCGGCCACCTCTCCTCTCCGTACCAAAAAAGTATTATACACTTGTTTTTTCAATAGTTCAAGAGGAGCGTGTTTGTTTTCTTAATTTCATGTGGAAGATTGTATCAAAAGAGGAAGTATTGAAACTTTCTGTATCCGCAGGATGTATGGTACCTTCCAGGG # Right flank : CCCGTTGGATTTCAAAGAAATTATACCACAGAACATATCAGAAAGCAAGAGTATATAAAAAGATAGAGAGGGTGTTTCATCATAAGTGATTCTAACACACAGAAAGGGTCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAGCCTAAACCATGGCAAAAACAAAAGATAAATTACCCTAACCTAGGTCAGGCCATTTTGGGGTGTTTCAGGGGAAAATCAACTAGTTCTTGTTTTCACAAATTCTCGTAAAAAGGTCTACCTTAAAGTGTTAAAGGATAAGTATGTCGCTTCTTTATTTGTCGTCAAATCATAAGTTCATGTTCAAGTTATTTCTGAGTAGTTGTTTTCCTTTTTCGCTCATTATTCCTTTTTTATTGCATAGCTTCCGGTACCACAAAGGCGCATGAAATTTTCCGTTACCGGTAATTGCATACTCCCTATCTACCTTCTCATGCCAGATACCTCTTACACCCACTTTGTGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA //