Array 1 23-350 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPS01000125.1 Vibrio cholerae strain A121001W1 NODE_165_length_262_cov_16.977098, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23 28 100.0 32 ............................ AATAAACTTTCCAGCTGGAATCATGGGCAACC 83 28 100.0 32 ............................ AAAACGCTGAGCGATGATGGAGTACTGGCCGA 143 28 100.0 32 ............................ GCGAAACCGGAGAGCTGAACGATACCTACATC 203 28 100.0 32 ............................ AAATGAAGATAATCTAACCGTGAAAGTTGCTG 263 28 100.0 32 ............................ TGACTAGGGTCGGTACCGATGGCATTAAGCAG 323 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGTGTTTAAGCCGGATTTAGTGG # Right flank : CGCTGAAAACATTTCGTTGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 79550-75559 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPS01000044.1 Vibrio cholerae strain A121001W1 NODE_47_length_97148_cov_28.664223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 79549 28 100.0 32 ............................ TGCACGCAACCCCACACTAGCGTTACGTTTAA 79489 28 100.0 32 ............................ TCAAGGTGGGTTTAAAAACCGCACATCACCTA 79429 28 100.0 32 ............................ ACCACATTCGTTATCACCATCCGCGTTACATT 79369 28 100.0 32 ............................ CACACGGTATTACCCCAACGATCACCGCTGGA 79309 28 100.0 32 ............................ ATACTTACCGACGCGCACCGGAATGCCGTACA 79249 28 100.0 32 ............................ GTTCGCGCTTACTGCGAAAAAACAATCGAAAA 79189 28 100.0 33 ............................ TCTAGTCCCAATTGCTCAGCGACAAGTTTGAAC 79128 28 100.0 32 ............................ TTATCAATCTGCTACCTATAACACGCCTTCGC 79068 28 100.0 32 ............................ AGTACATCATGGAACACGCGCATGAGATGAAC 79008 28 100.0 32 ............................ ACAAGATAAAGCAGGGATGGTTCGTTGGGGCG 78948 28 100.0 32 ............................ TCGCCTTTATGGCGGGCTTGTATCCTTCTCTT 78888 28 100.0 32 ............................ ATCAATAAAGTGGCGTTCTCTTTGAGAGATTG 78828 28 100.0 32 ............................ CGGCATGAGATGCGGAAGTTTTACACCATTAA 78768 28 100.0 32 ............................ TACTCTTTGGTTATGAAGTTCGGGTACTTTTC 78708 28 100.0 32 ............................ GTATCGCTTACGTCGATAACGTCTGAGACTTC 78648 28 100.0 32 ............................ TCCATCAAGATGACTTCAAGCTGCTGCAAGAA 78588 28 100.0 32 ............................ AGTAAAAAGCGATGATGATGGCAATCTTATTC 78528 28 100.0 32 ............................ AATGCGACAACCGAGCCGAAATAACGGCAGTT 78468 28 100.0 32 ............................ ATCCAGTACGTGGTCGAAAAAAATCAGGTTCG 78408 28 100.0 32 ............................ TTTTAAACAGGGTTTAAACGTGGCGGTGAATG 78348 28 100.0 32 ............................ GTTACCCACGCCATAAACTTGCGAATGATGAT 78288 28 100.0 32 ............................ GGAACCTTCCGTGGTGAGAAGGTGGAGCGCAT 78228 28 100.0 32 ............................ TACATCAACCAAGCACTGGAACAAGCCGACGA 78168 28 100.0 32 ............................ AACGTGATGGTATGGATCGAGTAACGCTTCTT 78108 28 100.0 32 ............................ GTGTTGAGCTTTCAGAACACGTCAATTATGAC 78048 28 100.0 32 ............................ TAGATGAGCCTGTCGTCGAAGAGCAACCAATT 77988 28 100.0 33 ............................ GATAATGGCCATCACCGAACAAACAATCTTTTT 77927 28 100.0 32 ............................ CATACGCTGAAATGGTGTTTAGCAAACATCAC 77867 28 100.0 32 ............................ ATCCAGTTGCAAGCTCAAACTGCTTTTTGGAT 77807 28 100.0 32 ............................ ATACGAGATAGCGCCAGCATTTGCATAGTTTG 77747 28 100.0 32 ............................ GTTTGCTGAAATCATCGAAGCAGTTGAAGAAA 77687 28 100.0 32 ............................ AGAAGAAAAACGCACATTCGATATTGATTCTC 77627 28 100.0 32 ............................ CTAAGCTCACATCAACAGACAGCTTACATAAT 77567 28 100.0 32 ............................ GAGCGTCGTGCTCGCCGAGATGCAGACAGAAT 77507 28 100.0 32 ............................ CCTATGGCGCAAGCCTCCATGCAACCTCTAGA 77447 28 100.0 32 ............................ GCTACCCAAAAGCTTTCTGTTTTCATAAAATC 77387 28 100.0 32 ............................ AGTGAATCAATCTGCGAATTAGATCTGCGTCC 77327 28 100.0 32 ............................ GAAAAAGCGAAATCAAAGGGAGTGAGTCTCCG 77267 28 100.0 32 ............................ CGTTACCAAGGCGGTGGCGACACGAGAAACGG 77207 28 100.0 33 ............................ ACTGACGTTTATTCTCTGGCCTTTCCGTTATGT 77146 28 100.0 32 ............................ GCAAGGGGGAGGGTGGGTCAAAACCTCCCTAC 77086 28 100.0 32 ............................ TGAAAGGATTGTTTTGCGGTTTAAGCCCGTAT 77026 28 100.0 32 ............................ CACTGGCAGCAGCACACCATTCAATCGCACAT 76966 28 100.0 32 ............................ GACAACCCAAAGCGCAGCCTCACCCCACTTGA 76906 28 100.0 32 ............................ AGAGCGGAAAGCTCAGACATCATTCCAGATGG 76846 28 100.0 32 ............................ AAACCAAGCGAGTGACATAATCGATCACGGCT 76786 28 100.0 32 ............................ GCTAGTTCAGAGCTTGCAGTGACCGTCACCAA 76726 28 100.0 32 ............................ GCTGGTAACATTACAGACCAAACCGATCAGAC 76666 28 100.0 32 ............................ ACCATGAATCACTGATCATGCGCATGATGTCG 76606 28 100.0 32 ............................ CAGCCAAAGAGCGTGTGCTCAAAGTGCTGCAA 76546 28 100.0 32 ............................ GTATTCGCCATAGCCAGTACGTTGATGGCGTG 76486 28 100.0 32 ............................ GCTCTTTGGGGATTGGGTCGTCACATTCCAAA 76426 28 100.0 32 ............................ CTCTATTTGAAGGCATGGACGCCACGCGAAAT 76366 28 100.0 32 ............................ TGACTGAATTTTCTAACCAAATGTTCGCACTC 76306 28 100.0 32 ............................ GAAACATGGCATTAGAAGCAGAGAAAATCGCC 76246 28 100.0 32 ............................ GCAATGGCAAAAACCAGCCTATGTACATTGTT 76186 28 100.0 32 ............................ ACCCAAATAGTTCGACTCTTCACACTCACCAA 76126 28 100.0 32 ............................ TCGTATGTCGCTTACTTTTAAGTCATTAAGAC 76066 28 100.0 32 ............................ TTGACGATTTATACAGCTTCCATCTGAAAAAA 76006 28 100.0 32 ............................ ATTCGCATTAATCCCCGCCAGCCTTGCAACGT 75946 28 100.0 32 ............................ CGTCTAACGAAATGCGTTTGGCGAGCTGTTCA 75886 28 100.0 32 ............................ ACCAAGCGCCTGCGGGCGCTTTGTTATATCCG 75826 28 100.0 32 ............................ AGCTCATTTCTAAGCTTCTTGCTGTGTAAGTC 75766 28 100.0 32 ............................ GTCACGCACAGTTAAATAAATAACCATGCTCG 75706 28 100.0 32 ............................ AGTGGCCCGAAATGGATTTGCTGCTCAAACGT 75646 28 100.0 32 ............................ AACACGATTGGCACGATCAAAGGGTGGTGGGA 75586 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 67 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAATCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //