Array 1 93162-95508 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIEK01000003.1 Streptococcus suis strain 2017UMN1435.21 NODE_3_length_170440_cov_86.851920, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 93162 36 100.0 32 .................................... TTTTCGCGGAATAAACACATCTCCTAATGAAA 93230 36 100.0 30 .................................... CCTAGACGATGTTCGTATCTTGCCTATTCG 93296 36 100.0 30 .................................... AGCGTATTGGTCGTTAGCTTCAGCTCCTGA 93362 36 100.0 30 .................................... TGGATTCCTTAGGATTCATGATTTGAAGAC 93428 36 100.0 30 .................................... CCAGTTCATGCGCGCTCATATTCTTGACCT 93494 36 100.0 30 .................................... CAAGGGAGATCAATACAAAGTATATTTATA 93560 36 100.0 30 .................................... TATTACAATATCATTTGTAAGCTAAGTAGT 93626 36 100.0 30 .................................... TCTTATCTTGATACTATTAGAAATAACTCA 93692 36 100.0 30 .................................... ATCAGCTATTTTCGAAACTCGTTCTACATT 93758 36 100.0 30 .................................... TAGCGAAGTATTGCCTCAGATTCGTCAGAA 93824 36 100.0 30 .................................... GGCAGCATCTGGATTGGTTGATTGAGGATA 93890 36 100.0 30 .................................... CTGGAATAAAGAATATGCTGATAAATTACT 93956 36 100.0 30 .................................... GTTGGATGTGTGGGAGACTATGTTGGCGCT 94022 36 100.0 30 .................................... GGTAAAGAAATTTACCAAGCCGGATGAATT 94088 36 100.0 30 .................................... GTCAGCTCATCAAATTACTCCCTGCAGAAT 94154 36 100.0 30 .................................... CACCAGCCATGGTCACTCGTTTGCTGAAAG 94220 36 100.0 30 .................................... GAATAGTAAATCTTCAGAGCCTAATTCTAG 94286 36 100.0 30 .................................... TACGCATGAAGCAACGAAATACATTGTTAC 94352 36 100.0 30 .................................... CGGTTTTGCCTACAATAGGTCTCACCTCAT 94418 36 100.0 31 .................................... AAACGGCATTCAAATTCAATGATGGTAAGAC 94485 36 100.0 30 .................................... TAAACCGTTCAAAAAATTCTTCAGGAATAT 94551 36 100.0 29 .................................... GTCGACAGGAACCAATCTACCAGTCAAAA 94616 36 100.0 30 .................................... AACGTCTTGGGCGTTACTGCTACACCAGAC 94682 36 100.0 30 .................................... CGCTGACAACATGAAGTACCTCTCATTGAC 94748 36 100.0 30 .................................... CTGACAGTCCTAGCCAGTCTCCGCTGAAGC 94814 36 100.0 30 .................................... ATGGTTCTGAGCTGTCTCTTCAGCAATTAA 94880 36 100.0 30 .................................... AAAGGGAAGAAAATATAATACAGTTGAATA 94946 36 100.0 30 .................................... AAGTTCTTTCAGAATGGCATCATCTGAAGA 95012 36 100.0 30 .................................... GTTCGATCCTTTATTTCATCCCATGCCATC 95078 36 100.0 30 .................................... CGTCGCAAAATCATCGTAAACCGTAACCAG 95144 36 100.0 30 .................................... GAATTTTTTGGCGGTTGCTGATATAGTTAT 95210 36 100.0 30 .................................... ATATAAATAAATTGGTTCACGTTATGACGT 95276 36 100.0 30 .................................... CTGTGTATCTAAACAAAGACTCAACTTATG 95342 36 100.0 30 .................................... ATAAATCGTTGCGGAGGCTGTAGCTTATAT 95408 36 100.0 29 .................................... CCGACTCGGTTAAGGTTGCCGATATTACG 95473 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 36 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATGAAAACTAGTACACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTCACCCTTGTCCCATCTCCCTCTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGACTGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //