Array 1 3-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOW010000372.1 Cohnella sp. REN36 Scaffold374, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3 29 100.0 36 ............................. AGAAAAATGGCAAAGACTATATCCTCGACGAAGAAA 68 29 100.0 36 ............................. GTTTAGGTGGTCTGGCTGTAATGGCTGGTATTCGTA 133 29 100.0 38 ............................. CGAGATGGTGGGTTGCATGATTGGACTGGCGCGCGCTT 200 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 37 CTTTACATCACACTACGTTCAGATAAAAC # Left flank : TCC # Right flank : TTCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATCACACTACGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 71084-73880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOW010000004.1 Cohnella sp. REN36 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 71084 33 97.0 33 ................................T ATGATTATATGATTATTACAGATGATGGTGGAA 71150 33 100.0 32 ................................. GCATCATCACGGTGACGCCATGGCCAAAATAG 71215 33 100.0 33 ................................. TCATTGTGCGAACTTGGCGACCAAGTAGTCGTG 71281 33 97.0 33 ................................C TGTACTGTTTGGGAGCATTCAACTGCTTCGCCC 71347 33 97.0 33 ................................C CGATCAGGCCCTCACGCGAAAAACTGCCGGAAA 71413 33 100.0 34 ................................. TCCTCGACGCGGTCAAAGCCTACCGCGCTAAGGA 71480 33 97.0 33 ................................T ACGAGATCGCCGTACGAAAGGGCGGCATGGCTG 71546 33 100.0 32 ................................. TGAATCCGCTGAGTGTTTGCCAACCCTTTTTA 71611 33 97.0 33 ................................C ACCACGGCAGCTTCTTGTGCTTCGAGATATGCT 71677 33 100.0 33 ................................. ACTACATGAATATCCAGGGCGATCGGGAAGCAC 71743 33 97.0 33 ................................C CCCTACACATGACTAAAGTTCCGCCGCATATCG 71809 33 97.0 34 ................................T ATCAAAAGGACTGATCATATATGGGAATTCGCAA 71876 33 97.0 34 ................................C GGTATCAGGGTTGTAGGTCTCCTTTGTCTGGTTG 71943 33 100.0 31 ................................. TCCAGCCGAGGCTAGATGAACGTTTCGATCC 72007 33 97.0 34 ................................C GTTGACGCGCACGGTGTTGGTGCCTTTGTCGTAT 72074 33 97.0 33 ................................T GTTTTTCCATACAAAAAGCCGCCCGACCCGGAC 72140 33 100.0 33 ................................. CGAATGATTTTACTTCAAACAGTAGTTCATCGT 72206 33 100.0 33 ................................. CCTTCACGAAGAACCTCGGTAACTATGAATCGC 72272 33 97.0 32 ................................T TGTAATTCAGGTACTCTTTGACCTTCAGCGCC 72337 33 100.0 33 ................................. TTTAGCCCCCCAGCGTGGGTCCGTATTTACTCT 72403 33 97.0 32 ................................T CATACCCTGCCCTACGTTTTGACTTGCTTGAG 72468 33 97.0 33 ................................C TCCTCTGTGCTATTGATGATCCGAACAAGTCCG 72534 33 97.0 33 ................................G CTATCGGCATGGACACCGTTAATGATGTCCGTA 72600 33 100.0 32 ................................. AACTTGTCCGTCACTAAAATACCGTTTGGCGT 72665 33 100.0 33 ................................. CTTTGCTTGCTTCTCTTTTTTCTGCTTCAAGCC 72731 33 97.0 31 ................................T TAGCATTCGGATTGAAGCTTGATTCGCGGGC 72795 33 97.0 33 ................................T GCTTGGCCGTCAACCGGTGCAGCCGTGCCGGCG 72861 33 97.0 32 ................................C GGGATAGGTATTTCACGCCTGGCGCCCGTAGC 72926 33 97.0 32 ................................C CTATACGCTCAAATATGCTTATGCAGAAATTC 72991 33 97.0 32 ................................G CGATCATCAATTACCGGTACATGAACAACTTA 73056 33 97.0 34 ................................C TCCGATGGCAAAGTGAGGATGAACCCATCTTGCC 73123 33 97.0 34 ................................G CTCTCGGTGAGCATTGGTCCGAACATGAAACCCC 73190 33 100.0 32 ................................. AATTGTCAACATTAGATGCGCTTTGTTTTATG 73255 33 97.0 33 ................................T CCTCACTTCCCTGGCGTATTGTTTGGCATAAAC 73321 33 97.0 34 ................................T GATCTGTGAACGGGTGGCTGCCGATGCTTAGGGG 73388 33 100.0 32 ................................. TCCGTGTACATGGCGCTGGATGCCTTCGATAT 73453 33 97.0 33 ................................G TGTTCGAGCCACAACGTCCAACGTACCTTTACC 73519 33 97.0 33 ................................T TCGATCTCCGGGCCTGTTGTGATGACGTTCTCG 73585 33 97.0 31 ................................C TCGATGGCGTAGACCGTGTTCGTTGTCGGGT 73649 33 97.0 32 ................................C AAGAGGAGGTGCGCCTCAATGTATGAGGGTCG 73714 33 90.9 36 ...A....T.......................G TGTTCGAGAGACTCGGCAAGGTGTACGGGTCACATC 73783 32 90.9 33 ..........-.....A...............T ATGTGTGCGACACGGAAACCGGAGTGGCCGAGT 73848 33 72.7 0 ..T.T...GT...TA.A......A........C | ========== ====== ====== ====== ================================= ==================================== ================== 43 33 97.1 33 GTCGCACCCCGCACGGGTGCGTGGATTGAAATA # Left flank : TCCCCGATGGTCGGGACCTATACGACCGTCCTGACGGCACAGACCGCGGCGGGCGTCCTTACGTGTGTGCGGAGGTAGACGGCGCGATCCTGCCGGAGCTCGCCGCCGTGAGCTTAGTCGCTGGCGTGCCGACCGCAGACCGCATCGTGATCCCCGCCGCCAGCCGGTCGCTGCCGACCGACGGCGCCAGCCAAACGGTGATTACGGTCCAGCTGAAGGACCAGTACAGGAATGACGTGGCGGAGCGGGACGACTCGCGCCAACTTGTATATCCAGAATATTGAAAGGGAAATCAGATGCCATGCAGAATATAAATAGTTAACTGAATAAAGTGCGAATGTGAAGTGCACATACATTACTAGTGACATTCGCACCAGAAAAATGGACATTTTCCTGCTTATTTTCTACGTTTTACTTTGCGTCTATTTAGACTCAAACCCATCATTCACGTAATTGGTTGTGATGTTGTGTTTTTTGTTAGAATTTATCTGAAATTCGCT # Right flank : CTCTTGAGCTGGGGTCTGTAGAAATTACTTTGTTGAATACACGCCGCATCCCGTGCGGAGCATGCTAATTTAGGTCCTGTAGACCATACCAACCGCCGAAAGACAATGAGTGAATGCAGGGTTGGAACATAAACCAGAGTGGCCCGTCAGCGCCTCGTTTCCAACATAGTAAGTATGAGCGAGCCAATTTACTTCCTTCGCACCGACATTTATTCAGAGAAGGTTGACTTAAATGTTGCACGAGAGAATGCCAAGAGGCAAAGACAATATTTACTTCCGTCCCAAATTTTACTAGGAAAAAAATACTACTCGATATAAAATGGAAGGGGAGAAGAGAAGGTCTTTCGCATCAAATGATATAGGAATGGAGACGTGGTATGGAATCAATTGCTCATATCCGCGCCAAAGATGGGAAGATCCAAACCGTTGAAGAGCACCTGCACGGTGTACGTATTTTGGCGGAGGCAGCGGGTGAAAAGCTGGGGGTTCGCCATATCGCG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCACGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 82425-85451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOW010000004.1 Cohnella sp. REN36 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 82425 33 100.0 34 ................................. TAATTTTTGCACACTTATTTTTGTTACAAATCTG 82492 33 100.0 33 ................................. TTTTAGAAAGTAACTCCGACGACAACGAGACAG 82558 33 100.0 34 ................................. ACTTATCAATTCAAATCCGAGAAGTTCACCAATG 82625 33 100.0 36 ................................. CCATTATTCGGACTCCACATCTCCCCAAGGGTTCGC 82694 33 100.0 35 ................................. TGCTGATGGCGGACGGTGAGCCGGCCGCGCAGGTG 82762 33 100.0 34 ................................. AAGAACAATGGACAACTTTACGCAAAGTATGAGG 82829 33 100.0 33 ................................. AATGGTCAGCAGAGGATGAGGAGTGGGAGGCGG 82895 33 100.0 35 ................................. AATAACTTGATTTGCCGTAGCATTACCACCTGAAA 82963 33 100.0 34 ................................. GTTTTTCATAATCGTGATTTCTGGAGATATTTCA 83030 33 100.0 34 ................................. CAGAGCCGCGAAAAGCCAGTAGCGCCGCCGCCGT 83097 33 100.0 33 ................................. TCCGAACATGAGATACGTAAATTTGAACATTAC 83163 33 100.0 33 ................................. TTTTATAAGCTCTTGAATAGCAGGGCGTTTTAG 83229 33 100.0 34 ................................. TCGTCTGCGCAAGGGGCGCGGGCCCAGCCGCTCG 83296 33 100.0 33 ................................. TTCTTCAGGACGTGCTCCTTCCAAAACTGCGAT 83362 33 100.0 33 ................................. ATAACATCTCGGATGTAAACGGCTTACAAGCTG 83428 33 100.0 34 ................................. ACAATAGTGCTCTGTCTCCGGGTGGTTCGCTTCG 83495 33 100.0 33 ................................. TCCAAAATGTTGCTGACGAACCCGTTCGTCCGC 83561 33 100.0 34 ................................. GCTTTAATTTTTATTCCTTCTTCGTATGCCTGTC 83628 33 100.0 33 ................................. AGGAAACATGACTTTAAACGCTTAGAGCGGCGC 83694 33 100.0 33 ................................. TTTATCTTGATTATGCTCGCTATGCGGAAGAAA 83760 33 100.0 33 ................................. TCGATTACCGTCTCCAGCTCGTTTACCGGAGTA 83826 33 100.0 30 ................................. TGGGCGACGATGCGAACGGAGATAATCGGC 83889 33 100.0 34 ................................. GATCAAGGTGCATTGGGGAGCCGCGCCCAACCCT 83956 33 100.0 35 ................................. CAACTTATGAGGCCGGAAGTACGGCAGGAGGCGTG 84024 33 100.0 35 ................................. GATTATGAGGCTGTAGAGCAGCTATATAAGCAGCA 84092 33 100.0 33 ................................. ACAGCAACGGAAGACGGCTGCTATATTCGGACG 84158 33 100.0 35 ................................. TACGAGGACGGCCGTGATGGTGGCGTAATGCTCGT 84226 33 100.0 33 ................................. ACATCGTACGCCGGGAATGACTCCGAAATCACA 84292 33 100.0 33 ................................. GAGATCGGGCTGGCCGATGAGGAACAAGGCGTC 84358 33 100.0 33 ................................. TACATGGCCGGGGCCGGGGTCGGCCTCGGGCTG 84424 33 100.0 33 ................................. CTCCATAGGGTCGCCGCGCCGATAGATACCTAG 84490 33 100.0 33 ................................. ATTTTGGGGAATCGGAAAAATAATGTCTCGGCG 84556 33 100.0 34 ................................. TATCAGGCAGCGGCCGGGGGGCTTCGCCCGTCGG 84623 33 90.9 33 ..............A.A....A........... ATCAAGCGCTACGTTTCAGCGTCCCCGTTTACG 84689 33 97.0 34 ..........T...................... ACATGATGGCATCCGCAGGTGAAGGTTAACGGCC 84756 33 97.0 35 .............................G... TGCGCCAGGATCAGGCCGACCGCATCACGATCGTT 84824 33 100.0 34 ................................. AATGCAGCGGTATCCTACAAGCGTACCAAGGCGG 84891 33 90.9 32 A............TA.................. ATCAGGTGACGAGTATCACGATCGTCGGTCAA 84956 33 90.9 34 .............TA......C........... TTGAATGGGGAGGCTGGATCCCCTGCCGTAACAA 85023 33 90.9 34 .......T.....TA.................. AAGGACTGGCATGACCCGAAGGAAATCGCCGAAA 85090 33 87.9 33 .C.....T..CT..................... AACAAGCTCATGAGCATATGGCAGGCTACCGGA 85156 33 97.0 34 ...............................T. AACCTGAATAAGGTCGGCGATGCGGTGAAGGAAT 85223 32 93.9 33 ......-...........C.............. GAAGCGGACGGGGGCGCCTGGAAGCTGAGGCTA 85288 33 87.9 32 .............TA....A...........T. AAGCCGAGTATCAGAGGTTAGAATCCTCTAAG 85353 33 81.8 33 .......T..A....AAA...A........... TTGTGAAGAAGAACAATGCCGTCGCACCGGCGA 85419 33 81.8 0 .....C...A.........AA.C.A........ | ========== ====== ====== ====== ================================= ==================================== ================== 46 33 97.6 34 GTCGCACCCCGCACGGGGTGCGTGGATTGAAAT # Left flank : GGATGAGTATCCGCCTTTCTTATGGAAGTAGGTGAATATGTTGTTGGTATTGATCACCTATGATGTTCGTACAATGGACGCTGCAGGAAAAAGAAGACTTAGACAGGTTTCGAGAGCTTGTTTGAGTTATGGTCAGCGCGTCCAAAACTCCGTATTTGAATGTGTTGTGGATGCTACACAATTTAAGACACTAAAATTGAAGCTGATTGAGCTAATCAATCAGGAAGAGGACAGCCTGCGATTTTATCAACTTGGCAATAATCACAGAAGCAAGGTTGAGCATGTGGGAGCAAAGTCTTCTTTTGATGTAGAAGGACCACTTATTTTTTAGTGCGAATGTGAAGCGAACATGAAATCCCAGGGACATTCGCACCTAAAAATCCTGACATGAGGAACATAATTTCGTTTAAATGACTGCATTTTTAGCAAAGTCAATGTAATTCCAAGTAATTTTTGAATGTAATTGCATGTCTTTCATTTGATTTGGCTGTAATGCAGCT # Right flank : TGCCCTCCGTAAGTGGCTAGGACACAGATAAGCCATCGTGTCACGGAATGCTTTTCGAAAAGCTATTTTTTGATAAACGAAAAGAAGCCTTCTACCCCGCTTGCAACGGGGTGGAGGCTTCTCGTACTTGTGAACTTCTTCGGTAACAGAGTCCGCGCATCAACCTGCAATCATCAAGGCAGCACGTTGCCCGCCGAACGGAAGATGTCGTACCACTCTTCGCGCGTCAGACGGATGTCGGCGGCTTTGCAGCAGTCCTTGAGCCGCTGGAGGTTCATCGTGCCGATGACCGGCTGCATGTTCGCCGGGTGGCGGAGCAGCCAAGCGATGGCGATCGTCGTGTTGCTCACTTCGTATTTGGCCGCGACTTCGTCGATCTTCTTGTTCAGCTCCGGGAACTTGTCGTTGCCGAGGAACACGCCTTCGAAGAAGCCGTATTGGAACGGCGACCACGGCTGGATCGTGATGTCGTGCAGCCTGCAGAAGTCGAGGACGCTGCC # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //