Array 1 785117-783089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDL010000004.1 Bifidobacterium dentium strain 793B Contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 785116 33 100.0 33 ................................. GAATTCAAATCATCCTTAAAACAATACACCCGC 785050 33 100.0 34 ................................. ATTTCGGAGAAGTTGTCGACGTATTTGCGGGCGA 784983 33 100.0 33 ................................. TCCATGCCGTCCAGGACGAGATACCTGTCGGCC 784917 33 100.0 35 ................................. CAGCAGAAGAAGTGGAGTGTGATTGGTGCTGTCAA 784849 33 100.0 33 ................................. TTTGAGTCTCGCTTTGATGAGTTTGCGCGTGTT 784783 33 100.0 34 ................................. TTTTTGCTCCCGTAGGAGGCGACGGGATAGCCGT 784716 33 100.0 35 ................................. CTTGTTGTCAGTTGATGGTTGTTTCGATGGCTTTG 784648 33 100.0 33 ................................. TCATACAACGACGCCTACGACGATGAGCCAATC 784582 33 100.0 33 ................................. ATCCCGGACAAGTACAAAAGCCAAGCACTCCAA 784516 33 100.0 34 ................................. TACGCCATCACGGCCGACGGGAAGCACACTCCAG 784449 33 100.0 33 ................................. CTTTCCGGTTTTGGTTTCGGGTTCGGCTTTTGC 784383 33 100.0 32 ................................. TTCTACTGGAAGTAACCCCAGAACATACAAAA 784318 33 100.0 35 ................................. ACCAAACAGCCCGGCGACGACGGCATCATCCACGA 784250 33 100.0 33 ................................. TACGACGGCGCATTCGACAGCCTCACCCCGGAA 784184 33 100.0 33 ................................. AACACAATGGCAATAAAGGAGCCACTACCTATA 784118 33 100.0 33 ................................. ACCACTCCCTGAGGCACAACACCATGCGACTGG 784052 33 100.0 33 ................................. GCCAAGGCAGTGCAGGGCGATACGGAAGCCATC 783986 33 100.0 33 ................................. ATGACGTTGACGTTGTTCGTGGTGTTCGCATCA 783920 33 100.0 34 ................................. CAGAATCCACTGTTCGAGCATTTCACGGTAATAG 783853 33 100.0 34 ................................. AGGTTCAGGTGGTTGCCGTAGATGTTGGTGCCCG 783786 33 100.0 33 ................................. CAAAGCTACTCGGATTACGAGCAGCTTTCCGGC 783720 33 100.0 33 ................................. TGGATGAGTGCGTCGTAGGTGTCGTTTTGGATT 783654 33 100.0 34 ................................. TGGAACAGAACGGTCTGAAAGCCATGGGCGAGAC 783587 33 100.0 34 ................................. CTATTGCATTATCTGCGCGACGTGGGATATGCGG 783520 33 100.0 35 ................................. TCGTGGCTGACGTAGGCTTTGAGCCTGTCAAGCTC 783452 33 100.0 33 ................................. TCCGGGATCTTGGACTGTAGATCCCCACGCCGT 783386 33 100.0 34 ................................. TGGAAGCCATGGATAGCCGCAAAAAAGACCAGAT 783319 33 100.0 34 ................................. TTAGCATTTGTCATATCCGAATTATGCGGATTGG 783252 33 100.0 33 ................................. TGGAACGCGCTACGCGAAACCAGCCATCCGATC 783186 33 100.0 33 ................................. ACGCCGAGCTCCCGGTCCCCGTCGGCCCTGGTG 783120 32 84.8 0 ....................T.A.-...A...C | ========== ====== ====== ====== ================================= =================================== ================== 31 33 99.5 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : TGCGGGGAAGAGACGGTTACGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCAGTCACTTCATCGGATTATCTAACTTTAATAAATGAAGTGATGAAAATCATGGATCAAGAAAAGGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : ATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGTTCCAGTTGGATGCGTTGACCGGTATCGCCTATACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCCCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCCGCCGGTGTGACCGGGTTGAGGAGGATTCGTAGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATTCCCCAGCCTAATATTTCTTGGTTCGAGACCGGGTATCGTCCCGTGTCTCAAATGTATTTGGATACTGCGCGACGCCTGTCGGAGGCGCTGCAATGTGACCCTGTTGATTTTCTAATTGATTGAAAGGATTCTATCATGAAGGCTGAGGTTGTTATTTTTACGAGGTTGGAGCGTCATGGCGGGACGATTCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //