Array 1 26554-23461 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOM01000024.1 Deinococcus aerophilus strain JCM 15443 sequence24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 26553 37 100.0 34 ..................................... AGTTCAAAGTGCGGGGCCTTCGGGTCGGCCAGCC 26482 37 100.0 32 ..................................... CTCGAAGTCGTGGCCCTGGTCGACGATGATGC 26413 37 100.0 34 ..................................... ATCGCCGCGCCCCAGTGGGTCGGGCAGATGGGGG 26342 37 100.0 31 ..................................... CTACCCGGCGACCTGCGCCACGCTGCTCGCG 26274 37 100.0 36 ..................................... ATGGTGCAACGACAACACCTTTTACGGCGGGCGCAT 26201 37 100.0 32 ..................................... TACGGGGTTTCGATCACCTGGCGCTACACCAA 26132 37 100.0 34 ..................................... CCTTTTGACGGCCTGCCCCGCCTCGCTGAAATCG 26061 37 100.0 36 ..................................... AACCTGCCCCCCGTGATGATGCAGGGCCTGACCGAC 25988 37 100.0 35 ..................................... GTCGGTGGGGGGGGCTGGGGGGCTGGGGGGCTTCA 25916 37 100.0 34 ..................................... GACGAGCTGGCCGCCTGGCATGCGCGCGGCATCG 25845 37 100.0 35 ..................................... GCCTCGACCGGCCTGCTGGCCCCTCGACCCTCGAC 25773 37 100.0 34 ..................................... CTGGGCGCGCGCCGGCCTGTACCGGGCGGCCGGC 25702 37 100.0 32 ..................................... AATACGCATGTTGGAGCCTCGCGAGGTACGCG 25633 37 100.0 34 ..................................... ATGCGGTAGGGCGTCGACCATAGCGGCGGCCGTG 25562 37 100.0 34 ..................................... GCCATCGCGCCGATGTAGATGAGCAGCGCCACGG 25491 37 100.0 34 ..................................... CGTAAGCTGAAAGTGCATGGCGTCCGCGTATGCG 25420 37 100.0 34 ..................................... TCCTCCAGCTCGGCGCTGGGGCGCACGCTCACGC 25349 37 100.0 34 ..................................... CCATGAGGAGGAGCTCAGCACGCCCCCCCGGGGC 25278 37 100.0 32 ..................................... CAACGCCTCGGGCCTGGGCCTGTGGACCACCG 25209 37 100.0 34 ..................................... ACGCGCTCGGACGCGGGGCGGGCGGAGACCCAGG 25138 37 100.0 33 ..................................... CATCTATGAAGGACACGCTGGCCCGCACGCGCT 25068 37 97.3 33 ....................A................ CCCATTGAGGGCCGCCGACAGGGCCGGGCTGGG 24998 37 100.0 33 ..................................... CCTGGCACTGCTGGTCGCCGAGCAGCGCGCCCG 24928 37 100.0 34 ..................................... ATCCGGCCACCCGGTAGCGGCGGGCAGTGGTGCC 24857 37 100.0 35 ..................................... GAGGCCAGCGCGGTCGAGGTCGCCAGCGCGCCGGT 24785 37 100.0 35 ..................................... ACGCGGTTCATCAGCGTGCGCGTCAGGGTGCCGGG 24713 37 100.0 35 ..................................... GGTGGGGTGGGGTGGGCGGGATGCTCGACGTGCGG 24641 37 100.0 34 ..................................... ATGCGTCGGTGTCCAGGCCGGGGCCGACAATGCG 24570 37 100.0 34 ..................................... CACCACGCCCGCTGACGTTTCGGTGAGGGTCAGC 24499 37 100.0 34 ..................................... AGCATCTCCCCCAGTTCCCCGGCCACCTGCCCCA 24428 37 100.0 32 ..................................... ACGGGCGCGTGGATGCTCAGACGCTCGATCAG 24359 37 100.0 35 ..................................... CATCAGGGCGTTGAAGTAACACCACTGCCGCTCGG 24287 37 100.0 35 ..................................... GTCTGATACGTGGAAATCGGCGGCATGGGTCGCCG 24215 37 100.0 35 ..................................... ACCCGGCACAGCGGACTCAGGGCCAGCGCCGTCAG 24143 37 100.0 37 ..................................... ATGCCGATTTCGAGCGGGTGCAGTTGCCCGTTGCCGT 24069 37 100.0 37 ..................................... TCGGGGTACGCCGCCGGGCCGCCCACCTCGCTCACGC 23995 37 100.0 34 ..................................... CACGAGGACATCGTGAGCTTTTTCGGGGGCAGCG 23924 37 100.0 34 ..................................... TATCAATCATGGTGAAGCCTCCAGAAGTCCGCCC 23853 37 100.0 33 ..................................... AATCAGCAGGCAGAACACGGCCCGCTCGTGGGG 23783 37 100.0 35 ..................................... AAGCGGCAAGCCGAGGACGAGTACAGGGCGTTTGA 23711 37 100.0 35 ..................................... ATGTGGTCGGGGGCCGGTGGGGGCGTGCCGACCGG 23639 37 100.0 31 ..................................... CTACCCGTCCGGCGGCGATCTTCCCCCGCAT 23571 37 100.0 37 ..................................... GCGGGCGTCCGGGATGAGCTTTGCCGAGTTCACGGCG 23497 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ===================================== ================== 44 37 99.9 34 GATTCGGCCTGCCTTCGGGTGGGCCGTGGATTGAAAC # Left flank : CGCTCCCACTACCCGCCGTACCTGCACAGATGATCGACCTACTCGTCTGCTACGACGTCGCCACGACCACTGAAGGTGGACGCCGCCGCCTGCGCCGCGTGGCGAAGGTCTGCGTCGCGCACGGACAACGTGTGCAGAACAGCGTATTCGAGGTGAGTGTGACAGACACACAACTGCTGACACTGCGGCAGAAACTGCTGGACATTCTGGATCCGACGGAGGACAGCATCCGCCTCTACCGCCTGCGGCAACCCCGCGACAGCTTTGTGGAAGCTTACGGCCGCGACCAGTACGTGAACTTTAGTGACCCCCTGATCCTGTAAACGCGAACCCTCCGCACATACGAAAACCCAGGGGGGTTCGCGCAATTCGAAAAGTCCGTTCTGGACGCGCTGCATGACAACAGAACAACGACACCTGCCCACAAAAGTGGACTTCTGCGAGCAGTTCGCGCAAACTGACGTGGGACTGCCGTCTGGGACGTATTCCAACAGCCACCA # Right flank : ATGCCTCACATCGAATATATACAGCTTCCCATCATTCCACGCCCCTCTTTCCTCTCCCCCGTCCTTTTTCGTGCCCCAGCCTCCTGCTCAAGCGTTGAAAGGACACTGGGCTATGCCATTGCGTAGGCTTATGATCCTGTGCCGCTGCATCTCCGGCTCCGGCTTTTACGGGGTAACTTGACTAATTTAAGCAGGAAAATAGTGTATATATTCACAGCTGCACATGGAGCTCCGAAGTCTGTTGAGCGTCCCTGGGCTGGCAGAGGGGGCTTTACTGCCCTCGGTCAGTCTCCTGTGAACGCCAGGAGCTCCATCATTCTGCTCGAATAGACTTCCCCCATGAACGCCCTCGCCCAAGCCATCGCCCAACGCGCGCAGGACCTTGACCCCGCAGGTTGTCGTCACACAGGAGCGGCCAGGTTCACTCGCCGCCCACATGCAACCTTTTGCACGTGAGTCGCCTGTGGTCACGGCCCGATCACGGTATCAGCGTACCCTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCGGCCTGCCTTCGGGTGGGCCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-15.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 4943-3023 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOM01000052.1 Deinococcus aerophilus strain JCM 15443 sequence52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4942 29 100.0 32 ............................. GTCTTGACGAAGGCCGCGTGTGCCTTTGCGGC 4881 29 100.0 32 ............................. TTGTCTTTCTACGGTCAGGCGCACTTCGCACG 4820 29 100.0 32 ............................. TTCGGGTTGAACACGTGCCCGGCGATCTCGGC 4759 29 100.0 32 ............................. GCGAGGCTGAGGCGCAACCGCGCCGCCTCTGA 4698 29 100.0 32 ............................. GTCGGCCGCGTTAGGCGCGGCCGGCCTTCAGG 4637 29 100.0 32 ............................. GCGTTTCAGGTACGCCTTCCGCACTTCGGGCG 4576 29 100.0 32 ............................. CCTTCATAGCCCAGCATGAGGGCACGACCAGC 4515 29 100.0 32 ............................. GTGGGCAGATGACCGGCAATCCTGGCGACGTG 4454 29 100.0 32 ............................. CCGCTGCAGAAATGGGGCCACGGTGACCAGGG 4393 29 100.0 32 ............................. GCGCGGCCGCCCCCACGGCCGCAACGTCGGTC 4332 29 100.0 32 ............................. GTTCATAGCGGCTGGCTTCCCGTGGGGCCAGC 4271 29 100.0 32 ............................. CCCTCGGGCCGGAACGCGCTGAGCAGATCGGC 4210 29 100.0 32 ............................. ACGTCAGCTGACGGCCGGCTGCGCTTCCTGGG 4149 29 100.0 32 ............................. CGCATCTTCCGGCTCTATGACACCTTTGAGCG 4088 29 100.0 32 ............................. AACCGGATCTCGCCGGATTGGGCGGGTCCGTA 4027 29 100.0 32 ............................. CGGCCCCCCCGAGGTAACGCGGATTCAGGAAC 3966 29 100.0 32 ............................. CTGCGCGGCGTGTTCACCGCCCTGCACGACGG 3905 29 100.0 32 ............................. CCGATCCCGTGGTCACGGGTGTGCGGCTGCGA 3844 29 100.0 32 ............................. TCCAAAGATGACTAACGGCGTTTACAGGGCTA 3783 29 100.0 32 ............................. GGGCGCGGCTGGAATGACCGCACGCCGTACCT 3722 29 100.0 32 ............................. CCCAGCAGACCCGAACGGTCCCGCTCATGCGT 3661 29 100.0 32 ............................. CAACTCTTCATAGAAAACTTCAGCAGTGCCGC 3600 29 100.0 32 ............................. GCAGCACCTACGCGAACATGGAGAGCGCGGAA 3539 29 100.0 32 ............................. TTCACCGTGGCAGCGCCGGGGGTGTTCGGGCC 3478 29 100.0 32 ............................. CGAACACCGCCACCACGTCCGCCAATGCCGCC 3417 29 100.0 32 ............................. GAGGCGAGCAATCTAGAGGTGAGCCTGGAGCA 3356 29 96.6 32 ...........A................. CCGACAGGCTGCCCATCATCACCGACGCCGCC 3295 29 100.0 32 ............................. ATGTGATTTTGCGGCTTGAGGATTACGGGTTG 3234 29 100.0 32 ............................. TACGCCTCCACGGCTGCGCGGGCGGCCGCCTG 3173 29 96.6 32 ..........T.................. ATGCCGTCCTCGTCGGGCGACAGCAGGACCAC 3112 29 100.0 32 ............................. ACGGAAACCCGCCTGGAACTGCACACCCCCGA 3051 29 96.6 0 ...................C......... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GAGTTCCCCACGCGTGTGGGGATGGCCCG # Left flank : TCACCATCTCCTCGGCGGCGACCACGAAGACCCCGAACCCACCGCCCCTGGCGACCTCTGGGACCCCGGTGGGGACGTCCAGGGCGGCATCAACCACGCATGATCGTCATGACCCTAGAAGCCGTACCGCCCAGCCTCCGCGGCGAACTCAGCCGCTGGCTCATCGAAGTGCAACCCGGCGTGTACGTCGGCAACACCACCGCCCTCGTTCGCGACCTCCTTTGGGACAAAGTCGTGCAGCACGTCCGCACCGGCCGCTGCACCCAGCTTTACCGCGCCGCCAACGAACAGGGCTTCGCCATACGCCTTCACGGTGACCCTCGCCGCACCCTGGTCACCCTTGACGGTTTTCAACTCGTTGCCGTTCGCAACACCCGTCATGCAGAATTACAGGGGGAGTACGACCCTCCCGAGGATGATGACAAATTGTGAGCTGAATCCACTGCCTACAGGCATACCTCCGGGAGTTCGCTAACCCTTGCATCCCGTGCTGCCAGAGT # Right flank : ATCTCTGCAGCCACGCCTGACGGCGCCTGGACAGTCATACGAGACTGCTGGTGGCTGAGAGAGGATGAGATGAAATGACCTTTGCCTCTCCGAAATTATCTGGTTATGAAGGCAGCCAACGTCCTCCCCGATAGGGAGAGCCGGATTGGTCCCAGCAGTCTGTTCCAGACCACATCTGACAGGAGCGATATGAACACACAACGCGATCCACACGGCGCGTCATATCCATCTCTCAGGCACTTTTCGTGCCCAACGCGTGCCCAACGGAAATGGGATTAGACTGTACTATTCGGGACGAGCCGGGAGAACAACCATCTAAGCAGATCTAAATGATGTGTGCCAGAGGCATAATTTAAACTGGACGGTCTCGAACACGCATGACCCGGGATGAGCTGACATACGCCTGTTAATCGAATGGTGGCTGGTTCGACCCCAGCCTGCCGAGCCAGACAACGAAAGCCCCCGCCTTTGCAGCGGGGGTTTTTCGTTGGGCTGGTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCGTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4036-6687 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOM01000058.1 Deinococcus aerophilus strain JCM 15443 sequence58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4036 29 100.0 32 ............................. GCGGGCGTCGTAGTCGCTGCCCGCGCCCCCGG 4097 29 100.0 32 ............................. CGGTCAGCGCCGGGGCGCGGCTGGCCGTGGCC 4158 29 100.0 32 ............................. GTGAACCGGATGTGGGATGAGCTGCTCATGTA 4219 29 100.0 32 ............................. CTGACATGCGCGTCATGGTTCGGGCCGCCAGT 4280 29 100.0 32 ............................. GTGCGCTGTAGACGGGCCTTCAGCGGGCGCGG 4341 29 100.0 32 ............................. CCGTCAAAGTCGGCCCCCAGCGCGGCCGTTTC 4402 29 100.0 32 ............................. GCCACCGATCCGGACCACATCATCGAGCAGGC 4463 29 100.0 32 ............................. GCCGTGCCGATGGTCAGGCCGGTGTCTCTAGA 4524 29 100.0 32 ............................. GGCGCGTGCCAGGAGCGCGGCATCGTGTTCGG 4585 29 100.0 32 ............................. TCCTCCCCGCTGAAGGCGTCACGCACCATCCG 4646 29 100.0 32 ............................. CGGTAAGGGGGGGGGAAACTGTACGAGAACGA 4707 29 100.0 32 ............................. CCGGGGCGCGTTGCTGGTATCGAGTTCCTCAG 4768 29 100.0 32 ............................. CCGGGGGAACCAGTGGGAGGGGTGTACGAGGG 4829 29 100.0 32 ............................. TCGCCGCCGGCGTTCACGGTCAGGACCGTGCC 4890 29 100.0 32 ............................. CGACACTAGCCCCGACCCCCGACCCCCTCACC 4951 29 100.0 32 ............................. GGCCGGGTCTCCCGGCGCTGGGTGGCCAACGA 5012 29 100.0 32 ............................. ACCTTCAAGAACCTGATCACGCTGGCCGACGA 5073 29 100.0 32 ............................. CGGTCGTTGTTGTTCTGCGGCAGTGGGTTGTA 5134 29 100.0 31 ............................. TGGGCCATTCAGAGCACGGCCGGGACGCTGC 5194 29 100.0 32 ............................. CAGAGGCCGACCTGATGAACCCCGACGTGTGG 5255 29 100.0 32 ............................. ACACCGACGAATAACCGACCGACCGACCGACC 5316 29 96.6 32 ............................C CCCACCCCCATCCTGGAGCAGCACGCCCACCA 5377 29 100.0 32 ............................. CGCTCCCTGGCCTGCGAGGCGTGCGGCGCGGA 5438 29 100.0 32 ............................. GCATACGCCGCAGAACAGCATGTGGGGGCCGG 5499 29 100.0 32 ............................. GCGCGCATCGACTTCCCGCTGCCCACCGGCGG 5560 29 100.0 32 ............................. GGCCGGGTCTCCCGGCGCTGGGTGGCCAACGA 5621 29 100.0 32 ............................. TTGCAGCGCTAATTTAATTTCCTCACGTGTGG 5682 29 100.0 32 ............................. TTCGTTGAGGGTGCCCGCGTCATGATCGAGCT 5743 29 100.0 32 ............................. CCGAATTGAATCTGGCCCGCGCTGACATGATC 5804 29 100.0 32 ............................. TTGCCGCACGAATGGAATGGGAGGTTGCTGTG 5865 29 100.0 32 ............................. CCCGCCGCGTGTGCCAGTCCGGCGCGGAGATA 5926 29 100.0 32 ............................. CGCACGCTCACGCCGTCGCTCAGTCCTGCGCC 5987 29 100.0 32 ............................. ACATCCACTCGTTTGCCGACGGTCTGGTGGAG 6048 29 100.0 32 ............................. GACGCCAACAACGACATTGAGGAAACCTACCG 6109 29 100.0 32 ............................. TGGCCGGTGATCCATTCGCGGCACGTCACGCC 6170 29 96.6 32 ............................T TCTGGATCTTGTCACCCCGCGGGGACAGTGAT 6231 29 100.0 33 ............................. CGGGTGGCCCCCAGCACATGGTTGTCCCAGCTG 6293 29 100.0 32 ............................. CCGGTGCTCGTCAGCGTGCGGTCGGTTTCCAG 6354 29 100.0 32 ............................. GCCCTGCGGACCCTGACGCCGCCCGCCCTGGC 6415 29 100.0 32 ............................. TCGTGGTCGAACAGCGGCGCGGCCTCGTCCAC 6476 29 100.0 32 ............................. CCCCGCCCCGGCGTAGATGACCTGGGCAACAT 6537 29 100.0 32 ............................. CCGCCAATCAGGACGCCGAGCCGCCCCCGCAC 6598 29 100.0 32 ............................. CGCTTTAAATGCTTCGGCTTCCGCCGGAGTCA 6659 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.8 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : TACGAACGCCACCACTGATGACCTTGCCGCCGAAACCCCCCACTTCGGTACCCGCCTCGGCGACGACAGTCTCCGCATCGTTCCCATTCACCGGAATGGCGCTGACTACCTTGATCCCAAAGGCCAGACCGCCGCGCAGATCACTACCCTCCAGAAAAACGACTGGGACACTGCCCGCGCCATCTATCGCCGCAGCCTCCAGGTGTCCCGCCACGACCTCATCCGGCACTACCGCGACCATCCCACCCGCCGGGGCACGGAACACACCGGCTGGGCCGCCCACCCACTCCTGCGCGACGCCGAACCCCTCATCCTGACCGGAAATCAGACCGCGATCGGCAGGACCCGCGTGACCCTTGACCCCGAACTCGGCCTGACCTACGAACGCATAGAATGATCTCGAGCATCTGCCCGAGCCGCATGAAAATGTAAGCTGAGTCCGAGGTGTCAATAGATACCTACAGGTGGGTTGAGACCTGAAAGGCACGTGCTTCTGAAGT # Right flank : GCGTCAGCTTGCCAACACCAAGCCGGGGCGCGTGAGTTCCCCACGCCTGTTCGTCTCCTCAGGGTGGGAGAGCGCTTGGAATCTGATGTGCAAACCCCATGACTTGTCCCCCTTGGCCCGCCTGGGCATTGTCACTTGTCCCCCCGCGCGCCGGTTCAGGCTGAGCACTGTGGCCAGACCAAAACGCTCCCTGCTGCCGTCGGTGACCGCTGAAGATATTGAGCAGCGGTCCTCCTTCCTCAGGCGCACCGCCCATGGCTGGGCCTGGCGATGTGCGTACTGTGGACAGTTCGCGTCCAGTGAGACCTTGGCTGGCAAGTACGTGTGCCGCTCACATGGTGGCGTCACAGCAAGACAGCGCGACCTAATGGCACATGACGCGGCGCGCCGTGCTGGGAAGCGTGTGCTACGGCCTCCCGGCCGTCCGCTCGAGTCCGGGCTGTACAGCCGCCGGCCTCAGGTGCGGGTCGATCAGCTCGTTGAGGATTTCCGAGCGCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //