Array 1 1044149-1044451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCMI010000001.1 Bradyrhizobium sp. U87765 SZCCT0110 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1044149 32 100.0 36 ................................ GCGCAAGGCGCAGCGCCGGTCATCGCGCAGCAGGCC 1044217 32 100.0 36 ................................ ATGTTGAAGTGCTCGCCTGTCGCAAACATGATCCGT 1044285 32 100.0 35 ................................ CCCCAAAACAGAAAGTACCCGGCGCGACGATCAAG 1044352 32 100.0 34 ................................ GTATTCACGCCAGTGCCAAAGTAGCTCAGCGGAA 1044418 32 96.9 0 .............................T.. | GC [1044446] ========== ====== ====== ====== ================================ ==================================== ================== 5 32 99.4 36 GTCGCCTCCTTCGCGGAGGCGTGGATAGAAAC # Left flank : GGTTCTGGTCCGACCAGGGACCGGCGAAGCTGCAGATGGTCGGCCTCGCCCACGGCGCGACACGCCAGGTGATCAGCGGTGCGGCGGAGGACGGCGCATTCTCGATCTACCACCTGCGCGATGACGAACTGCTGGCGATCGATTCCATCAACCGCCCCGCCGACCATATGCTCGGCCGCCGCATGCTGGCGTCGGGCTTCCATCCCGGCGCCGCGCTGATCGCCGAAGGCCCGGCCGCGCTGAAAGCCGCGTTCGCGGAGTTCGGCAAGGCCGTGCCGAGCGCGCGCTAGGATCTTTCCGAGCCGTCCGCCCTCGGTTGTGGCGCGAACCTGAAGCATGCCGGGATTTCCCGGCACCTTCGCGCTCGATCTAACACCCTGAAACATAACAGTATTCACGACCAGCCCCGCGACCTCGGCCAACCTGCAGCGATTTTTCACGACAGGTTCGCGCAGACGCCGCCTTTTCGCCAGCAAGCCGAACAGGTTAAAGGCTGAGCA # Right flank : CGTCGATCGCGCAGTCGGGCCCCATACCCCTGCCCACCAGACCCGCACAGAATACCATCATCGGAGTTGACCACCCTTACCACGACAGAAGACTTGACGAGGCAGCCTCCAGTTTCCACACTTGGAGAATTCGATTTTTTGTTCTTTCGAAGCTCCGCCATTTTCTGCTCCGGCTTCATTCATCCGTCGATTGTCCTCCCTCCGGCAGCGCCATGCACTACGCGCATTCGACCAAACGCGCTGATCGCTCCGACTGGCAGCGGCTTCTCGATCATCTTAACGCAGTCGCACGCCTCGCTGCGGAACTGGGCAACAAGTTCGGCGCAGGCAGGGCTGCAGCGCTGGCGGGGCTTCTCCATGATCTCGGCAAGTATGCGCAAGCCTTCCAGATCTACATTGGAGGCCACGGACCGAGCGTCGATCATGCCACCGCCGGTGCCCAGCAAGTGCTGAAACTGCCGATCGAAGGGCGCGACAGGGCGATCGCCGATCTGCTGACC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTTCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1052621-1054127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCMI010000001.1 Bradyrhizobium sp. U87765 SZCCT0110 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1052621 32 100.0 33 ................................ TGCGATCTGGTCGAACACTAGAAGACGGGGGAG 1052686 32 100.0 35 ................................ ACCTGAAGATTGCTGAGACCAGCAAGCATCAGATT 1052753 32 100.0 37 ................................ CGGAAGCATATAGCCTTCATCGATAAAGACGCCGATG 1052822 32 100.0 36 ................................ GCCACCACGCTGGCTACCGTGAACGCGTCGCCAGGA 1052890 32 100.0 34 ................................ GCAGCGCGGCTTCTTCGGCGGCGCGGTCCTGGCC 1052956 32 100.0 35 ................................ CTCCAGCGCCATCCGGTCTCAACGGCCTTCTGAGC 1053023 32 100.0 33 ................................ TACACGTGGCGGGAACTGCGCCGCGGAAATCGA 1053088 32 100.0 36 ................................ ATCGATGGCGATCTTGGGCGAGTTGAAAGCAATCGC 1053156 32 100.0 34 ................................ AGAAGCTGCTGGCGATGGGGGTGGACGGCGCGGG 1053222 32 100.0 35 ................................ GATAGATTCTGCCGGAGTGAAGACCCCATCCGATT 1053289 32 100.0 36 ................................ AGAATCTGCAGCCGTATCTCAATCAACAGGGCGCGG 1053357 32 100.0 36 ................................ GGCGCGATTGATCCACGCGCTCTTGCGCACGAGGAT 1053425 32 96.9 37 ......................A......... CTTCTGCCAAGCTCGCAGCCATTCGCGAGCGAGGAAC 1053494 32 100.0 34 ................................ CACGGAGACGTGCAATATGACCTGAAGCCAAGCC 1053560 32 100.0 35 ................................ CGCTATTTGATCGCCACGTCCTCGTTCACGGTGAC 1053627 32 100.0 34 ................................ AGACCCGGTCTCACCGGTCCCCGCAAAGTGTCGC 1053693 32 96.9 35 ......C......................... TCCGCCATCAACGCCTCAACGTCCTTGCCTCCACT C [1053697] 1053761 32 100.0 34 ................................ TTCTGGTTCGTCGATGCCAGCCTGTCGGCTCCAG 1053827 32 100.0 35 ................................ CAGATTTCGGGTTCGGCGACCGATCAGGGCGTGTG 1053894 32 100.0 35 ................................ GGCTCGCAGATCGCGATGAGATCGCGCAGCCCCTC 1053961 32 100.0 35 ................................ AAACCATCGTTGTTTCCTATTTCGGGGCGACTGCT 1054028 32 93.8 36 ............................C.G. CAGGTCACTGTGCCCGGGCTCTGTCGGGTGACGTTC 1054096 32 87.5 0 ................G.......T.GA.... | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 98.9 35 GTCGCCTCCCCCGCGGAGGCGTGGATAGAAAC # Left flank : TTCTGGAAATAGCGAACTCATCATGCTCGTCCTTGTGACCTATGACGTGCGTACGAGCGAGCCGGGCGGAGAGGCGCGCCTGCGGCGCGTCGCCAGAGCCTGCCGTGACTATGGCCAGCGGGTCCAGTTTTCAGTTTTCGAGATCGAGGTCGATCCGGCACAATGGGCCAGGCTGAAGGCCCGCCTTGAGGGCTTGATCAAACCCGAGCATGACAGCCTGCGTTACTATTATCTGGGTGCCAACTGGCAAAGGCGCGTGGAGCATGTGGGCGCCAAGCCCGCAGCCAATCTCGGCGGCCCCTTGATCGTCTAACAACCCCGGCGCGAACCGCAAGCGCACCCGAATCTTCCGGGATGTTCGCGCTCTCCGTAAGACGCTGATGATAAAATAGAATCCGGCGACATATCACTCACAGCACAGACGCAAAGACGATCAGCGCGACCACTTCGCGCAACGGACATAATTTCCCATGACAACAGAATAGGTTAGAGCAGGAGCG # Right flank : CATCGCGCAGACGGCGTGAACGTATGTCGCCTCCAGGCACCTGGCATTGCGTATGTGCTGCGCAGCACCACGAATATCCCCCGCTTTGAACGATTCCAGCGGCAAGGCCACCAGAAGGGATTATAGCCGCCAAGCGGATATGCCACACACACCGTCTCCTCCACCGGTCCGACGCACCCCGCGGTTCACCCGGTGCGGGCGCGACCGACGGTGAGACGATGACCGGACCGACCCTGCGCCGCTGGCTGTGGGTGCACAAGTGGACCAGCCTGATCTGCACGCTGTTCCTGCTGCTGATCTGCATCAGCGGCCTGCCGCTGGTGTTCCGCGACGAGATCGGCGACCAGCAGGATGACGGCCTGCCCTATGCCAGCGTCGGACTGGATGCCCGGAGCGTAAACCTCGACGAGGTCGTCGCGACCAGCCGCAAGATGTATCCCGGTGAAACCATCGTCTCGGCGTTCGTCGACGACGACGAGCCCAGGATCATGGTGTTCATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCCCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //