Array 1 325576-326397 **** Predicted by CRISPRDetect 2.4 *** >NZ_NONS01000001.1 Escherichia coli strain MOD1-EC6953 MOD1-EC6953_1_length_415876_cov_61.5391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 325576 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 325637 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 325698 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 325759 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 325820 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 325881 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 325942 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 326003 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 326064 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 326125 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 326186 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 326247 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 326308 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 326369 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 352099-353347 **** Predicted by CRISPRDetect 2.4 *** >NZ_NONS01000001.1 Escherichia coli strain MOD1-EC6953 MOD1-EC6953_1_length_415876_cov_61.5391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 352099 29 100.0 32 ............................. TCAGAAAGCGACGCGTTATTCTGGCTGGATGA 352160 29 100.0 32 ............................. CAGGCCGCGCAAAAATCTTCCGTTCTGCAATC 352221 29 100.0 32 ............................. TCTCGCGGTTTACGGGCGACCCCGCGTTACTA 352282 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 352343 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 352404 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 352465 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 352526 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 352587 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 352648 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 352709 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 352770 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 352831 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 352892 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 352953 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 353014 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 353075 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 353136 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 353197 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 353258 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 353319 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //