Array 1 65226-64985 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUF01000003.1 Eggerthella lenta strain CC8/2 BHI2 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 65225 34 94.1 35 ......T................G.......... TCGATTGGCTCAAGGCGGCAGACCCGAAGCTTGAA 65156 34 91.2 34 .........C..................C...G. CTCTACGGGATCGAGCCGGTCAAGGCGTCCGGCG 65088 34 100.0 36 .................................. TGGTATCGAAGTCACTGCGCCACAGCCATGCCGACG 65018 34 88.2 0 ..............A.A..T...G.......... | ========== ====== ====== ====== ================================== ==================================== ================== 4 34 93.4 35 GTCGCACCCTCATGCAGGGCGCGTGGATTGAAAT # Left flank : GACTGCTATATTCTTGAGTGAGGATAGCCATATCGGCCTGATCATACCAGGATTCCGCGGCGGCCATGTGCGCGCTGCTTGCCGTATCGGGCGGCTTGTCATCGGCCGAATTTGCACAAAAAGCGTCGACGTTCGATGTTGTGAACGCTCGCGCTTCTTCTTGCCCGCTTGTTCGTCGGCGTTTTCCCTGCACGTTGATTGCGGGGGAGGCTTTGGCTGGGGCGATGGTCGAGCAAAGCATCCAACGTCGGCGATTTTTGTTCAGGAGACGCCCTTTTCGTTGCAGTCATGATGACGGCAGGGCCTTCTTTGCGAAAAGCGGCGGCGGAGGATGCTGCAAATTCGACTGAGTGCGAATCAAAGGCGAACATGATCGATGCGGGAGGTTCGCACCCGATGCGGGATCGATTCGATCGTCGAGGTTGAGACAGTGCGGTTGGCTGCTTGCACGGAATGCAGGATATTGTGCTCGATTCCTTCTCTATGCCATGATCGTTGCG # Right flank : CGGTTTCGGGCCACTCCGCTCCGCCCCTTCCGCTCTTCGTGTGCAGCAAAAACGAGGTTTTGGCAGTCTTGACCGCTTGGGACGACGTGTTTTCGAGGTCGGGTGCCGTGTTTCCGGGGCGCGGTCGAGTGTCATCTGGGGTTTTGCCGCGGTGCCGTCTCGGGTGCGAGGACTCCTCGTGCCAAAACCTCGTTTTTGCTGCACATCGCCTTGTGAAAACGTGCGGCGGGGCATTTTTCAGGCAGCTGTGGGGGCGGGTTGGGCGCGAAACGGCTCCCATGACAATCGCAAGGCGGCTTCGACCTGCTTTGACGCGCCTTATCGCCTCATGCGGTCGTATGATCCCAGGTGACGAAATCCACGTGCGACCGTCGATACCCGACTCGACCGCCGAAACTGTCATAGGAGCCGTTTCGCGTCCAACCCGCCAACCGCCCGCCAACCCGCCAACCCGTCGACGCAGCGCCTCCCCGCCATCCCTCGCGCAGCTGCGACAGCGC # Questionable array : NO Score: 6.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.67, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCATGCAGGGCGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCATGCAGGGCGCGGGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 30032-26062 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUF01000009.1 Eggerthella lenta strain CC8/2 BHI2 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 30031 33 100.0 34 ................................. TTGAAGCTGCGCAGGTGCGCAGGATACGAATGCA 29964 33 100.0 32 ................................. CCTTGCTCGTGTAGTACTGCGGGGTGCCCTTG 29899 33 100.0 34 ................................. GCCTCCCACATCTCGCGGAAGTCGCGATGCCGCA 29832 33 100.0 33 ................................. TTGACGAGGATGCGGACGACACCGTTGTTCGCG 29766 33 100.0 34 ................................. CATTACATCCCGAACGGGGGCTACGTCCTGTGCC 29699 33 100.0 33 ................................. TCCGCAGCCTCCGCGCGCATCGAGCGCGCCCAC 29633 33 100.0 34 ................................. TTCATCGAGATTCACACGAACAGCGAGCCGGAGC 29566 33 100.0 35 ................................. CTGATCGAAGACCACGACGGGGACGCCGGGGTTAG 29498 33 100.0 32 ................................. CAGCCGGGTTGTCGGGCGCTTCGACGGTGATC 29433 33 100.0 34 ................................. TTGGACGCGCCCGCATCGACCTTGATGCGGAACA 29366 33 100.0 34 ................................. ATGCCCGGTGACGCATCTCCCATCATCTCCGGCA 29299 33 100.0 33 ................................. AGGAACGTGAAGCCGCGCGTGAGCTTCGTCATG 29233 33 100.0 36 ................................. CTTTGATGCTGCTGGGTATCCCCTTGCCCTTCGCGA 29164 33 100.0 33 ................................. AAGCGCGCGGCAAAAGAGACAAGCTCATCCAAG 29098 33 100.0 33 ................................. GAGACGGTCGCCCGATCGTCCGATGACGGGGAG 29032 33 100.0 33 ................................. ATCACTCGCAGCATCTTGGGAAACCTCCTTTTC 28966 33 100.0 35 ................................. AGCTCCAATACCATTTTAAATTTTACTTCCAACGG 28898 33 100.0 38 ................................. AACGAACGCTCCGACATTGACGGCATCTCCCGTAGGGA 28827 33 100.0 35 ................................. TCCAGCGCGCTCATGATGGTGGCCCAGTCCATGGC 28759 33 100.0 33 ................................. TTCGCAGCCGCGCCTTTCGTGGCCATGTCTCGC 28693 33 97.0 34 ......T.......................... ACTCCGAGCGACTCGCCCGTGCGGGCGCTGCCGA 28626 33 100.0 33 ................................. GTTGTCAAGCTCTGCTTCGCCTCCCAGTCAATG 28560 33 97.0 33 ......T.......................... GGCCAGCAGCGCGACGCAGCGCCTCATGGCGAC 28494 33 100.0 34 ................................. CGTATCCCAGGTTAAAAAAATCTCCGCAGACGCG 28427 33 100.0 35 ................................. TTGTTTCGGCAGCACCAGCAGCTCACGCGGTCGAG 28359 33 100.0 33 ................................. TCGCCCGTCAAGCCGACCGGCGGCGAGGCCTTC 28293 33 100.0 34 ................................. TGGTGATAGATGACCTCGGAAAGGACGCGCCCAC 28226 33 100.0 33 ................................. CTGCAATGCCTGATCTGTTTGCCGATGTACTCA 28160 33 100.0 33 ................................. GAGAGCGCGGAGCATATGACGCAGTGCGTCTGC 28094 33 100.0 33 ................................. GTCAACGCCGGTGGCACGTGGCCTGCGTCCCTG 28028 33 100.0 32 ................................. ACGCGGCTGCCGTCCTCCATGCGCGCGTCCAT 27963 33 100.0 33 ................................. GAGACCGAAAGCCGCGATTCGTCGAGCATCGTC 27897 33 100.0 35 ................................. GCTTTCGTCTGCTACCTGCTCGTCAGGGATGCGCG 27829 33 100.0 34 ................................. CAGATCATCCCGAACCCGTGTTTCGACGAGGAGT 27762 33 100.0 33 ................................. CGCCTGCTTTGCAGGGTCTTGCAGATCGGCGGT 27696 33 100.0 35 ................................. TCCTTGACGTAGAGATAGCGAAACTTGCCGTAACG 27628 33 100.0 33 ................................. AACTTTATCACACTGTCTCGGCTCGATAGCTCC 27562 33 100.0 34 ................................. AAGCGCGGGATGCTCGTTGATCTTGTCTACTACA 27495 33 100.0 34 ................................. CGGCATGGACGGCGATGATCTTGTTGAGGGCGTG 27428 33 100.0 33 ................................. GGATGCGAACCAGAAGAGCTCTACGGTCTCAAG 27362 33 100.0 34 ................................. CATACTGTGAAAGGGGTATAGCCAGGTTCGACGG 27295 33 100.0 34 ................................. CGTCTGGTGATCTCGTCCATTCGATCTGCTCCCT 27228 33 100.0 33 ................................. CGTATCCCAGTACTACCCTGCGGTCGCTGGCGG 27162 33 100.0 33 ................................. TGCCATGCCCTGACCCCTTCAACGGTGGACATC 27096 33 100.0 33 ................................. CGACCTTGCGCGAGACGATGCCCGAACCGTCGG 27030 33 100.0 35 ................................. TCTCCGCTTTCGTCTCGCGGCCATTCCATCCCCGG 26962 33 100.0 34 ................................. CACGCACCCACCATGTGATAGCTGGTCGATCTGT 26895 33 100.0 35 ................................. ACGTTGACCTACGCTGAGAACATGCAGGACAATTC 26827 33 100.0 34 ................................. GTCTCTGCTGGAAGCCAATCGGTCTACATCGAAA 26760 33 100.0 35 ................................. GGGCATATCGGCATAGCATGGTACGAGGAAGCCGA 26692 33 100.0 33 ................................. AACAGAATGTCCTCGTCGTGGGCGCTGAAGCCG 26626 33 97.0 33 .....................A........... TGACGAGTATCGCCTATGGCTTGAAAGCGAGGT 26560 33 100.0 33 ................................. AAGCACACCACCAAGCAGACGCGCAGCCTCATA 26494 33 100.0 34 ................................. GTCATCTAGGACGTTGCCGGAAACGACATCCTGC 26427 33 100.0 34 ................................. GTGCCTCACCGGCCGGCACGTACGCTCGCGCACG 26360 33 100.0 34 ................................. CAGAACTTCGCGATGGCGAAGCAGAGCGGCTACG 26293 33 100.0 35 ................................. GTCCCCGTCGGCGGCTTGGTGTCCATGCTGATGAT 26225 33 100.0 33 ................................. TCGTCCTCGCTGAGGAAGTAGGGGTCGAGCGAG 26159 33 100.0 32 ................................. AAACGGTTGAACGATTTGCGGACGCTGGCGAG 26094 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ====================================== ================== 60 33 99.8 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : TGCGCTGCGATCTAGACGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCGGGCCGACGTCGCTTGCGGAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAACAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAACCAACGTACGAAGCTGAAGGGTTCTTGGCGTTGTAGGACCATGGTGCGAGCATGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTAATGACACTATATGTTGATCGAAGCAGTAAATTTGCACATAATATTGCA # Right flank : TGTTCGGGTTGGCTGGCAAGCTGAACGCTGACACGTCATCGTTCAGCTTGCGGGCGCGCGGGTTGAAGTCGCGAGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCCCTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCTCAAACGAGGGGGTAACCGATCCTTGCCGTCGCTTCCTATCGAGACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGCCTGCGCCGAGTTGTGAAAGGCGCAGGCGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAGCTCAAACGTCGTGCAGTCCACCAGCCCGCGATTCGTCAGCCGCAGCTCGGGCAGGCATGCCAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAGGCATGCACCTTCTCGCTCATCGTCACAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //