Array 1 163242-161948 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNP01000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM2715.S BCW_8423_1__paired__contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163241 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163179 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163118 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 163057 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162996 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162935 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162874 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162813 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162752 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162691 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162630 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162569 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162508 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162446 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162343 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162282 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162221 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162160 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162099 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162038 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161977 29 96.6 0 A............................ | A [161950] ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAGCAACGACAGTAAATAATTTTTCGTGCTGGTGTTCCCCGCGCCAGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAGCGGGGATAAACCGCAACCAGGCTGGATCGTAACTCCTATCCCCTC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181539-179558 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNP01000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM2715.S BCW_8423_1__paired__contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181538 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 181477 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 181416 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 181355 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 181294 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 181233 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 181172 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 181111 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 181050 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 180989 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 180928 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180867 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180806 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180745 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180684 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180623 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180562 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180501 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180440 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180379 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180318 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180257 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180196 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180135 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180073 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180012 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179951 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179890 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179829 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179768 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179707 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179646 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179585 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //