Array 1 1-366 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEA01000050.1 Ligilactobacillus salivarius strain NCIMB702343 NCIMB702343_contig_50, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... TGGGACAAGTGGATTATCTCTAGGCAACGC 67 36 100.0 30 .................................... AAATATCGGTAACGTTGTAGCAACACCTAC 133 36 100.0 30 .................................... GAACGTTAGCATAACGCTTAGCATTAGCAA 199 36 100.0 30 .................................... AAGGTAATCGAGTGATGTTCGTGGTTCACA 265 36 100.0 30 .................................... AAATCAGTTAAGTTGTAAGCAGGATTTTGT 331 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 54808-55612 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEA01000004.1 Ligilactobacillus salivarius strain NCIMB702343 NCIMB702343_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================================================================== ================== 54808 32 100.0 34 ................................ GACCAAATTTTGTTTCTCCAAGTTATGACACGCT 54874 32 100.0 34 ................................ GACCTTGATGTAAATCAATATGTTGATACTCCAA 54940 32 100.0 34 ................................ GACCTAGCACATCATCATTTTTGAATAAAGGAGT 55006 32 100.0 34 ................................ GACCGAACAACTTTTAAAGCTGCCGCTAGTAAAT 55072 32 100.0 34 ................................ GACCTCGGACGTTTGGGACAAAGAATATACCACG 55138 32 96.9 34 ........................A....... GACCTTGACGGTGTGCCTGGTACTAGGTTTTTAT 55204 32 93.8 34 ....................T...A....... AATCATATCGTCAAGATACAGATAAACATTGGGT 55270 32 93.8 33 .........A..............A....... GATAGTTAATACTCCACCGCAGCCACCGTGCCA 55335 32 81.2 34 ..........A.C...........CGA....T AACCTACTTTCTTTTATGATATAATTTAGACATA 55401 32 93.8 33 ........G...............A....... GAACGGTTCTGAGCCTAGTTAGAGTGAATAGGT 55466 32 87.5 84 ..........A..A......T......A.... TATCTTGACTTTGTCTCCACAGTTATATATTCTAATTTCAGAATATATTAATTGACTGTTTTAGAGTGGTTAGTTTAGGTATTA 55582 31 81.2 0 ..........A.........T..-....G.CG | ========== ====== ====== ====== ================================ ==================================================================================== ================== 12 32 94.0 38 GTTTCAGAAGTATGTTAAATCAATTAGGTTAA # Left flank : ATGTTAAATCAATTAGGTTAAGACCGAAAACTAGACAAATTGACTATCTAAACATGTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACCTGGGACAAGTGGATTATCTCTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCATCCGCATTGACACCAGTCGGATAG # Right flank : GAGGCCTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTAAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAA # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 8271-6846 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEA01000015.1 Ligilactobacillus salivarius strain NCIMB702343 NCIMB702343_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 8270 36 100.0 39 .................................... AAAAATATCAAGTTTTAAAAGAACGATGTTCATTTATTG 8195 36 100.0 37 .................................... TAATATAGTCGTACCGTTAAGGCGGTACAAAAAAATA 8122 36 100.0 36 .................................... GTTAGATAATCACTGATAGTGCGTGTGTGGCTATCT 8050 36 100.0 38 .................................... TAAATCACGTTCCAAAGCCCTAAATACTTTACGTGTCA 7976 36 100.0 40 .................................... TGTAAAAAGTGAATATTTTAAAAGAGAGATTAAAGCTTGG 7900 36 100.0 33 .................................... ATTTGTTTGTTCCCAATGTTCAAATACTTTATT 7831 36 100.0 38 .................................... CAGCCTCCATCTCAATATAATCAAACTCTTTATCACAA 7757 36 100.0 36 .................................... TTCATCTACTTCTTGCTTGTCTAGTTCAATAATTTT 7685 36 100.0 37 .................................... TTTTAATATCGCAAAAGTAAGCTTTATCAAGAACTAA 7612 36 100.0 38 .................................... TCCAGTAACTTTAGTTGTTTTCTGGATAATAACGTGAC 7538 36 100.0 35 .................................... ATCATGTATCTTCCATGTTGTCAACTGTTTTTTTG 7467 36 100.0 37 .................................... AAACAATTCTGTTTCATTCATTCTATCAATATACTCT 7394 36 100.0 36 .................................... TTGATTGTTTTTGTACTGTGTTTAAATTCTTTTACT 7322 36 100.0 37 .................................... AAGTTTTTAGTGCTTGCCACAATGTAAATTTTGTTAC 7249 36 100.0 38 .................................... TTTAAAAGATGTTTTAATATTTAGTTTTTTTAGAATGT 7175 36 100.0 34 .................................... CCGTTAGTGGTATACTTAAGTAAATTCAATTAAC 7105 36 100.0 37 .................................... TGTTGTTCTAGTTGCATTTTTGTTAGATCCATCATCA 7032 36 100.0 38 .................................... CAGATTTAGCGAAGATCATTTGTTTCTTGCCTTTTCCG 6958 36 100.0 40 .................................... CCGTGTGGGATTCTTTCAAAATCGTTATCCAAAACATATG 6882 35 88.9 0 ............................-....TCT | TT [6849] ========== ====== ====== ====== ==================================== ======================================== ================== 20 36 99.4 37 AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Left flank : ACAGGATTGAAATTACCGACTTTCATTGAGGAAGGAAGATAAGTATGATGCTATTAGTATGTTTTGACTTACCAAGAGACACGAAAGAGAATAGGAAAGAAGCAACTAAATATCATAAGAAATTAGTAGAATTAGGTTTCACAATGAAGCAATTTAGTGTGTATGAAAGAGAAGTGAGACAAAATTCTACTAGGGATAGAGTAATTAAAGTGTTAAAAGATAGATTACCTAAATCAGGTGCAATTACTTTATACTTACTTCCTAACGAAGTGAATGATTCACAAATAACTATTTTAGGAAGTGAATCTGTAAAGAAAACTGTTAGGAAACCTCAATTTATTGTGTTATAATACACTTACATTACTGTAAGGAACAGTAGTATAAATAAAACTTGTCTGAATTTTGACCAAATAATACTTATTAATTTAACCTATTGCCCGTTTAGGGTACCATTAAAAATGTCAATAATTGTTGATATATCAACTAATTGATCAAAGAGT # Right flank : AATTAAAATGATAAGAAGGAGAGTAAAAGTTAGAAAAAATAATATATAATATAGGTAATTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCATGTATTGGTGATACAGATCCTATAAGAAATAGGCATGATGGGGCTTTATTGCATTTAGCAAGGGTATTTCGTCCTAAAAAAATATTATTAATATATTCTGAGCGTGCTTTATTAAAAGAGAATAATATCTTATTAGCGTTAAATTCTATAGAAGGATATAGTCCTGTAATAAAAAAAGATGAGAGACTTATTTCCAATAGTGAAGTGTTTATTTTCGACAAAATGTATGAAATATTAAATAATGTAGTCTTAAAGTATTCTAGGGATGATGAGGATTTAATTTTGAATTTATCTAGTGGAACCCCACAAATGAAGTCAGCTTTATTTACTATTAATAGATTAAATGATATTAATGTTAGAGCTTATCAAGTAATAACACCTAGTCATTCTTCAAATGAAGGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //