Array 1 69466-71801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHTUT010000016.1 Xanthomonas campestris pv. pennamericanum strain NCPPB 4349 scf_2121_16.contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 69466 31 100.0 34 ............................... AATATCTGGGACATCAACACGGCGACCGGTTACG 69531 31 100.0 34 ............................... AGTCCACCATTGATGGCGCGCGTGACACCTTCCA 69596 31 100.0 36 ............................... CCAGACGTACGCAACGATGACGCCGTCGATGGCATG 69663 31 100.0 35 ............................... CACTGGCTCATTGAGCAGTGTCGCCCTGCAGCAGT 69729 31 100.0 35 ............................... GGCACGCAGCAGTCCGTATGGCGTCAGATTCGTCG 69795 31 100.0 35 ............................... GACCTTGGCGTGTGGAACGGGCCGCACGCGCGGGG 69861 31 100.0 35 ............................... TTTTGCGGGCGGTCAAACGAGCCCTGCAGCAGGAT 69927 31 100.0 35 ............................... AATATGAACTCGACCAACTCAAAGCCCGTCTACGA 69993 31 100.0 35 ............................... ACAAATGCGTGAACCACACGTAAGACTACAAAATC 70059 31 100.0 33 ............................... ATCCAGCCCCGGAATTATTGAGCGGCCCCCGCA 70123 31 100.0 35 ............................... CTGTTAGTTTGAGTAGTAGTGGCCGCTTACGCGCC 70189 31 100.0 34 ............................... AACGGCTGCTACGCCAGATCCACACGGCGGAGCT 70254 31 100.0 34 ............................... TCCTGCACCTTGACGTCCATGACGGTGCGTTGGC 70319 31 100.0 34 ............................... AATCTAGTATCGGCTGGCCTGGCGTGTCTGACGG 70384 31 100.0 35 ............................... CCATGTGTAGAGCTCGGCTAGGCTCATTGCTTGAT 70450 31 100.0 35 ............................... GCCAAGGTCCCAGTCACAGCGGACACTGTGGCTGG 70516 31 100.0 36 ............................... CGCCTCAGTTCGTGCAGGTCGTGATGTCGGTAGATG 70583 31 100.0 35 ............................... CGAGCGATGACGGTAGGCGCGGGGCCCGCCGCAGG 70649 31 100.0 35 ............................... CAGACCGAAGCGCTGAAAGTGCCTGAGTGTGCTAC 70715 31 100.0 36 ............................... ACGCGCACCCTCGACTAGCTTGCGGATCGACGGCAG 70782 31 100.0 35 ............................... TTACCGGGAGAATCGGAACAGGAACAGGAACAGGA 70848 31 100.0 37 ............................... TGGCGTCGCCTGCGCGGCCGTTGAGGACTGTATGACC 70916 31 100.0 34 ............................... TCGCCCAGCCGGCCCTCCGTAGCCGCTAACTCTG 70981 31 100.0 34 ............................... AAGACAGAACTAACACCCTTGAGAAATCTGCTTA 71046 31 100.0 35 ............................... CTGAAGGATCTAACCCACTATGACGTCCCTTGCTG 71112 31 100.0 35 ............................... ATTTACGTGGCTGCCGGTCACTCTGGTATCGGCTA 71178 31 100.0 34 ............................... GATGAGAAGCAGCTAGCAAAAGCGGCGATGGAAG 71243 31 100.0 35 ............................... GCTGCTGGCTTGCGGGGCGCGGCCCCACCGGTCCA 71309 31 100.0 34 ............................... CGTCAGAAAGGTGTGAAGACTGTACCGCTGTCAC 71374 31 100.0 35 ............................... GCCCTGCACCGGGTGCCCCGTGAGGGCCGAGGCCA 71440 31 100.0 37 ............................... ATCAAGTACCTTGCCGAGCAGAACAAGCCAGCTGCAG 71508 31 100.0 35 ............................... AAGCTCTTGCCGTGGAACTTGGTCACGACGATGCG 71574 31 100.0 35 ............................... AGCATCTCCCCGCCAAACACGCGCACCAGTCGGCT 71640 31 100.0 34 ............................... GCCGCATCGGGGGACATCACGCCAGACGGCATGC 71705 31 100.0 35 ............................... TGGCAATTTGCCCGCTGCCCGAGCTGCAAAGGCAC 71771 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 36 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AATGACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTACGTCGTCAGCACCAGCTCTCCCGGGGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAAATAAATACACAGCGGATTCACGGGGTCCGCATGACGACTTCTCAACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CAATTTAAACTCGCCCCGCCAGCCGGACGCTGACGAGGTACAGGTTGGACATGCTTGAGGCCTGCGTATGGCAAAGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGAACCATTATTTGACGATGATGGTCTGAGGCTTGCCTGCAGGCTTGCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCCGCACCGGTGGTGTTCAACGTCGCATTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGTCAACTTCGCCGACACGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCCTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCCGCCGCGGCCTGGGTGCCGACCGCCACGCTGGACACCGTCACTGCGCTGCCCATCGCAGCACCGCCATCGGTGCTGGCCGCACCGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //