Array 1 1828-3304 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSD01000009.1 Salmonella enterica strain BCW_4381 NODE_9_length_109573_cov_4.7842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1828 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1889 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1951 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 2012 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 2073 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 2134 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 2195 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 2256 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2317 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2378 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2439 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2500 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2561 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2623 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2726 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2787 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2848 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2909 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2970 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3031 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3092 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3153 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3214 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3275 29 96.6 0 A............................ | A [3301] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16321-14340 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSD01000016.1 Salmonella enterica strain BCW_4381 NODE_16_length_81219_cov_4.70391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16320 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 16259 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 16198 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 16137 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 16076 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 16015 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 15954 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 15893 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 15832 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 15771 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 15710 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 15649 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 15588 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 15527 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 15466 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 15405 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15344 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15283 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15222 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15161 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15100 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15039 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 14978 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 14917 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 14855 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 14794 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 14733 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 14672 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 14611 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 14550 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 14489 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 14428 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 14367 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //