Array 1 111030-110512 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNK01000011.1 Salmonella enterica subsp. enterica serovar Anatum strain 189 NODE_11_length_133865_cov_10.4164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111029 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 110968 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 110907 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 110846 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 110785 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 110724 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 110663 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 110602 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 110541 29 93.1 0 ............TC............... | A [110514] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128547-127299 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNK01000011.1 Salmonella enterica subsp. enterica serovar Anatum strain 189 NODE_11_length_133865_cov_10.4164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128546 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 128485 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 128424 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 128363 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 128302 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 128241 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 128180 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 128119 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 128058 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 127997 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 127936 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 127875 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 127814 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 127753 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 127692 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 127631 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 127570 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 127509 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 127448 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 127387 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 127326 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //