Array 1 34131-33852 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPRM01000004.1 Sulfolobus acidocaldarius strain GG12-C01-13 GG12_C01_13_scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 34130 26 96.2 36 .........................C ATATCATCATCTCTCATCATCTGCCTGCAACGTATC 34068 26 100.0 35 .......................... CACATTCATCCCTATAGACATTTATTGAAAACGAG 34007 26 100.0 40 .......................... TTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 33941 26 100.0 38 .......................... AAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 33877 26 73.1 0 T..A.G.........AA......G.C | ========== ====== ====== ====== ========================== ======================================== ================== 5 26 93.9 38 GAAGAATCCCATAAGGGATTGAAAGT # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : CGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGTTT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 74175-73517 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPRM01000004.1 Sulfolobus acidocaldarius strain GG12-C01-13 GG12_C01_13_scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 74174 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 74110 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 74043 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 73979 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 73917 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 73854 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 73793 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 73727 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 73665 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 73602 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 73541 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ========================================== ================== 11 25 99.6 38 GATGAATCCCAAAAGGGATTGAAAG # Left flank : AAAGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACC # Right flank : ACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 25885-21194 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPRM01000001.1 Sulfolobus acidocaldarius strain GG12-C01-13 GG12_C01_13_scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 25884 24 100.0 38 ........................ CTCTAAGAGGATCTTTGCCAGGGCATAGTAATAAGCTG 25822 24 100.0 35 ........................ GAGTTCAAATAGAATAATGGAACTGAAGATACATT 25763 24 100.0 36 ........................ GAAGCAGAAATTCGATGAGGCATTAAACGCATTAAA 25703 24 100.0 38 ........................ AACAGCATTAATATTCCGAGGAGGATTGCTAAACCGTT 25641 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 25581 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 25521 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 25463 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 25400 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 25342 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 25283 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 25223 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 25164 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 25106 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 25047 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 24987 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 24929 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 24867 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 24807 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 24749 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 24691 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 24628 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 24570 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 24510 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 24447 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 24386 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 24329 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 24269 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 24211 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 24149 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 24091 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 24031 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 23973 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 23910 24 100.0 39 ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 23847 24 100.0 37 ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 23786 24 100.0 34 ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 23728 24 100.0 37 ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 23667 24 100.0 36 ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 23607 24 100.0 38 ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 23545 24 100.0 36 ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 23485 24 95.8 35 .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 23426 24 100.0 34 ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 23368 24 100.0 36 ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 23308 24 100.0 36 ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 23248 24 100.0 35 ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 23189 24 100.0 37 ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 23128 24 100.0 35 ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 23069 24 100.0 39 ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 23006 24 100.0 35 ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 22947 24 100.0 33 ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 22890 24 100.0 34 ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 22832 24 100.0 35 ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 22773 24 100.0 36 ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 22713 24 100.0 35 ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 22654 24 100.0 34 ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 22596 24 100.0 37 ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 22535 24 95.8 37 .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 22474 24 95.8 35 .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 22415 24 100.0 35 ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 22356 24 95.8 34 ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 22298 24 100.0 35 ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 22239 24 95.8 35 ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 22180 24 100.0 35 ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 22121 24 100.0 38 ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 22059 24 100.0 36 ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 21999 24 100.0 36 ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 21939 24 100.0 35 ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 21880 24 100.0 35 ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 21821 24 100.0 37 ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 21760 24 100.0 39 ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 21697 24 100.0 37 ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 21636 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 21577 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 21518 24 100.0 36 ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 21458 24 100.0 36 ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 21398 24 100.0 37 ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 21337 24 100.0 36 ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 21277 24 100.0 36 ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 21217 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 79 24 99.7 36 GTAATAACGACAAGAAACTAAAAC # Left flank : ATCACTTAGAGTATAAAACTTCCTCCTCACGTTCACTAAAGAGTTCAAGAACGGCGACACTAGGACCACATCGTTTCTCTTTCCGTGGACGAGAACTGGTATATTTAGACTGGAAAGGAACAAGATCACCTCTGATGTTAGCCTAACATTATTACCGACAATGACCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : ACTGTAACTATTTAAAATAGAATGATGAGAGAATGACAAAGCCTTGCCGTTTATGGCGAGGTAAAGGTTTCTACTTACGAGAGAAAAGTTGTTATTAAGAGGAAGCCCGTAAGAGCATGGGTCAGTCAGTGTGTGTCCCTCTTTCCTGGTACATATCCCTGAGTCTCGAGGAGCGTGGAGTTAGGGCAACTCCACCAAAGGGATAGGGGTTGAGTGGCTGAAGGCTCAGCCAGTGGTCTACCACTGAAAGAGTGGAGCGGAGCGGGCTTCTGAGCCCACTAGCTATGAAGTGATAAAAGTGAAGGTGATAAACTACAGACCTGTGAACTGCCCTAGGTAACCCTCACTCTTTAGAGCGAGGAGGAAGTCAGTATCACACCAGATGCTGTGATGTCTGTTGCAACCTTAATTGCAATTGTATCCGACGAGACTGTCATGGGAATCATTCAAACTTAGAATACATAGATCCTCAATTCATCCTCTCCAATCATATGTCTAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 38252-46419 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPRM01000001.1 Sulfolobus acidocaldarius strain GG12-C01-13 GG12_C01_13_scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 38252 24 100.0 35 ........................ AGCTCTTTCGCACTGTTATTTTACAATTTACACGT 38311 24 100.0 34 ........................ GCTTGTTGATTTGGGCCCATGCGAGGAGGATTAA 38369 24 100.0 38 ........................ TGATATTGTATCGTTGTAGTTAGTATTGTCCAGAAGAA 38431 24 100.0 37 ........................ AAGAACTCCCGGGAGCCCTGGTGGTATGCCCGAAATT 38492 24 100.0 38 ........................ ATCGTAAGAGAAGTGGGCTAGCGCTACCCTCCTCCACT 38554 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 38616 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 38672 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCGTTAAAAAATAAGGAAA 38735 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 38793 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 38854 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 38920 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 38980 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 39043 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 39102 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 39162 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 39221 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 39280 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 39340 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 39401 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 39462 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 39521 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 39579 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 39641 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 39700 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 39758 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 39817 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 39877 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 39936 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 39995 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 40054 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 40114 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 40174 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 40234 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 40294 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 40352 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 40410 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 40468 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 40527 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 40586 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 40647 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 40705 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 40764 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 40823 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 40882 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 40941 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 41001 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 41064 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 41123 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 41181 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 41238 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 41302 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 41360 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 41418 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 41476 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 41534 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 41593 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 41652 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 41713 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 41774 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 41834 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 41893 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 41953 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 42013 24 100.0 41 ........................ TTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTT 42078 24 100.0 36 ........................ AAAACAATGTTTTAGTTTTACAGACATTATAAAATT 42138 24 100.0 36 ........................ ACTTCAAGAATGGAATACATTTGTTAAAAATTTGCT 42198 24 100.0 34 ........................ GCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGC 42256 24 100.0 35 ........................ ATATAACAAAGCGCATTGCTGATACGTTACACAGA 42315 24 100.0 34 ........................ TCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTT 42373 24 100.0 35 ........................ TTCCACATTGATGAGGTAAGCCTCTGAAAAGGTTT 42432 24 100.0 36 ........................ TGTGACCAAATTGAGGCAGAAGTATCCGCAGGGGAA 42492 24 100.0 36 ........................ ACCCCTGACTTTGTCCTTAAAGATAATGAGTTCTTT 42552 24 100.0 38 ........................ AGAAAATGAGTAGTGAAGTTAAGACAAAAAATAAGTCA 42614 24 100.0 38 ........................ TTCACTGTCAAATTTGTCTAGCAGTTCTTTTGCGACTT 42676 24 100.0 35 ........................ ATTATACCACGCCAAAGAGATGGCGTGAGGCGATA 42735 24 100.0 34 ........................ TATTTGAAGGCTTCCCTTAGGGCGTTCTTTAGCG 42793 24 100.0 35 ........................ GTTAAATTCGGCGCCCCAGTAGAAGTCTTTCTCGC 42852 24 100.0 38 ........................ CTATGTGTTGATGAGAGCACAGCTGGGCATGGAGCGTA 42914 24 100.0 35 ........................ AGATGTAGAGAAAACGATCGATTTAAGGCATGCGA 42973 24 100.0 35 ........................ AATAAATCAATCCTTTTTTTAAGGTCTTTCCAAGA 43032 24 100.0 40 ........................ TCAACACAAGGAAACACTTACAATTGGTATGAGTATGAAG 43096 24 100.0 34 ........................ CACTAGACACTGCAGGGACAGATATCAAAAACTT 43154 24 100.0 37 ........................ GTGCCCCTGTCTCCTGCAGTTTTAACGCTAAATATCT 43215 24 100.0 36 ........................ ACCTATCACTTTCCTTGCGAATTCAACCAGTGTTAA 43275 24 100.0 37 ........................ CACCAGCTGTGATGACATAGTCTTTGTCCAGTAATGG 43336 24 100.0 34 ........................ TTCTTCATAAGGATGTATCTGTACCAGTTCACCA 43394 24 100.0 36 ........................ GTCTTTACAGAACTTGGGGCGAAGTAGTATCCCGCA 43454 24 100.0 37 ........................ GATGAACTCGCCTGTGTTACTTGATGTGTATAAGGAA 43515 24 100.0 36 ........................ AACTCTGAGACTGAGGTTCTTTTTGTCTCACTAGAT 43575 24 100.0 35 ........................ ATAGGCTAGAAGCTGCAAAGAGGCTGGGCTGGAAA 43634 24 100.0 34 ........................ TACTGCAAGATCTACATTATAGTTCAATGATTTT 43692 24 100.0 37 ........................ ACGAGTCTCTTTATCAATATAGTGATGTTATCTACAT 43753 24 100.0 36 ........................ TTTTTTGCTTTTAGCTTTTCGTATTCTATTAATGAT 43813 24 100.0 37 ........................ AGTGGCTTAATGTACCTTTTGGTACTGACTATCCAAT 43874 24 100.0 34 ........................ GCTGATAGATAAAGATAAAATAAAAATAGACTTT 43932 24 100.0 37 ........................ GTCTACTTTAAGTGAACTTTATTGTAATCGTATCAAA 43993 24 100.0 33 ........................ TAAGCGTCTAAATAAGTTACCGACAATTGTTAT 44050 24 100.0 35 ........................ ATTGTTGAGAGATGCTACTTATGAAGAAAATGGAA 44109 24 100.0 38 ........................ CTTCATAACTCAACAAAACAAATAAGGTATGCCACTCT 44171 24 100.0 37 ........................ CTTAGCGTAAGAGAGCGTATATTATGCAGCGTATATT 44232 24 100.0 37 ........................ AATTTTCAGAGTCACTTACTTGGAAATTTTGTCTCTC 44293 24 100.0 36 ........................ CAAAAACTGCCGTTTAATGCGCCACTTCTAGAACAA 44353 24 100.0 35 ........................ TTTTGAGAATAGAGTCTATGAAATCTCCTTTTATT 44412 24 100.0 36 ........................ AGGTTCACTCACCCTCGCCTCGCAAGATATTCCAAA 44472 24 100.0 39 ........................ ACAATTCTTTCTTTTTTTATAGCTGTTGTACACATTCCT 44535 24 100.0 35 ........................ TAGTAATATCTAGCGACTTCCATAATTGCTGATGC 44594 24 100.0 35 ........................ ATTATAAAATTGATGTATTATACATTTGCAGAAAT 44653 24 100.0 39 ........................ CGCTATTCTCAAGTACTCTGCGATCTCGCCCTCTGAAAG 44716 24 100.0 38 ........................ TTCATATCGCTCTTTTGAATACTTCATCAATTCTTGTT 44778 24 100.0 34 ........................ TTTTATATTCTGTTGTTCATTTTTTATATCATTT 44836 24 100.0 35 ........................ ATATTATTAGGAATGACAGCCGGAGCTACTACTGT 44895 24 100.0 35 ........................ TTGTACAAAAAAGCTGAATTTAAGCAAGTCGGAAT 44954 24 100.0 36 ........................ ATTTAGTTTGAATATTATGAGTAATTGAGAGTTGGT 45014 24 100.0 37 ........................ TTGCTACAGGAAATGGAGAAGGTGAATATCAGGGAGG 45075 24 100.0 38 ........................ TTTTATCTTCAAAGAGTTGAAAAAGAGAGGGTTAGATA 45137 24 100.0 37 ........................ CTTTCTTCTTCATCTTTATCGATCAAAATTAGCCTTA 45198 24 95.8 37 .C...................... TTTATTATCAAGAGCATTAAGTAATTTTGGAAGACCG 45259 24 100.0 37 ........................ TAATAACTCTCCTACCTTTTCTATTTTTAGCATTTGG 45320 24 100.0 37 ........................ TATTTCGTAATCTTCTATAAGTTTTGAGTTGAATGGC 45381 24 100.0 34 ........................ GTATAGTACTGGTGTATTACTTCCAGATATCCCT 45439 24 100.0 35 ........................ CACTCTCTTCAATCCGATTATATCAATTTACTACA 45498 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 45559 24 100.0 36 ........................ GTTGTAGTCATTCCAGTAATGACTAAGATATTGTGT 45619 24 100.0 37 ........................ TGTAATACAATATTACGCTAGCAATACAACAAACATA 45680 24 100.0 35 ........................ ACACTCGCCGACTCTCTCTCATTTATTGCGAGATA 45739 24 100.0 35 ........................ GTGTTGTTCGAGACTTCTACTGCCATTAATATTAG 45798 24 100.0 36 ........................ GATTACTTTATGCTTTATTCAAATATAGAATAAAAA 45858 24 100.0 35 ........................ GTTGGGTATTTAAGCTTACGCATTATATTTTTGAG 45917 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 45978 24 100.0 34 ........................ TAATATAGCGACCACAGAACTCTTGCTATATTTC 46036 24 100.0 35 ........................ CTCTCAAGAAATTCCAAAAGTTTATCAAACTCCTC 46095 24 100.0 37 ........................ TTTCTACATTATGTACTACCGATAAAACATGTGATCA 46156 24 100.0 37 ........................ TTCTCTTGGTTCAAAACCACTTAAATCTTCGTTATTT 46217 24 100.0 36 ........................ TTTTCATCAACATCTTGACTCCGGTATTCGACATCA 46277 24 100.0 35 ........................ AGTGGTCAGGGCTAGATATCTGCCCACTACCAACT 46336 24 100.0 36 ........................ TATCAAGAAAAATAGGGCTAGCCCAATTCCAATGAT 46396 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 137 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : TGTCTTTACATTCATATGTGGAATTATTTTTGAACAATTTAATATGTTGTAGGGCTTGGGATCTCATGAACAGTTACAGTAGGTGAGCCTCTACACTTACTTCATTGAAGTTTGTCCACTGCGTTAAAAAGTGTAATATATAAAAATTTTTAAGTTACAAATATACCTTTAAAAATTTTTAATTTTATTACATGCCTAGATAATTAAAAGTAAGAGCTTCATTGAGTCTAGTAGTAAACTGTCTAAAATTCATAGAATTTTATTATACACTTATTAGTCTACCAGGAGAACATCGAAGAAATTCATGGATAAACATAAAAAAAGAAATGGAAGTGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCA # Right flank : CTCCATGTAAAATATCATGACACATATATTAATTTTGAAGCAAAATTTTACGTCCCAAATGTTATCGCTTATGTAGGGTTATAACGTGTCCCTTGTGTGGTTATGAGAATCAGTACTCATACAAAGTTGATTACCATATTGATCCAATCTCGGCGGAGGGGGAGTCTGCAACGTTAAATGTTCCCTCCTTCAACTCTGCTGTAACAAATAAGGAAAAAGTTTTTATTCTCTCAATATTTTGATTTAGTTTATGAGGATAATTGACGAGACTAATTGACATAGTGAAGAGTAATCCGAAGATTCTCCTGTATTTGCTGCTTCCAGCGTATGTACCCATTTTTCTCACCGTTATAGCCATTATTGAAGCGTTGACGGCAGTCCCTCATTTAAGTGAAGTAACGCCTTTACTAATTATCACACCTATAATAACTGTGTTCTTCGTTCCCGCAATAGCATTCTCGTTGTACCCAAATCTACCTCTGGAGGTGGTAAGAACTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //