Array 1 10489-10762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLL010000633.1 Streptomyces sp. SID10692 contig-6000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 10489 30 100.0 31 .............................. CTAGAGCATCACTTTGCTTTCGAGCCAAGAA 10550 30 96.7 31 .............................C GGTGGATCACCATGAGGTTGGCGATGCCGAG 10611 30 93.3 31 ............C................G CGCCGTTCTCCTCCTTGAGGGTTCCGGCGAT 10672 30 86.7 31 ...........TGG...............A GCAGGGGCAGGAAGTCCAGGACTGCGGCGCC 10733 30 73.3 0 ..............GC.T....CT..GAA. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 90.0 31 GTGGTCCCCGCGTACGCGGGGGTGGTCCCT # Left flank : CCGACAAGATCCCGCCCTGCCTCCCCGAGGCGGTGGAAGTCCGTTCGCCGGGCGCCACGGAACCGATCTACGAAACCCTCGTCGAATGCACCAACTGCCGCCGCCCAGGCCCATCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGTCACCGCGCCCACACCACGGGCGGCAACGACACCGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCCTCGTCGGGCAGGCCGGGCTTACCGCAGCCCCGGGGCCCACGCCTGCGAAAGGCCTGACCACAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGTGACCACTCTGCGGCAGGAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCGAGCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCCGCTCCTCAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCTGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGACGTGTTCCTCGTCGTTCTGGAGGGCGGGGGCACGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGATCCCGACCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGCGGTGAGCCG # Questionable array : NO Score: 3.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4019-3685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLL010001570.1 Streptomyces sp. SID10692 contig-7000034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4018 29 96.6 32 .......T..................... CATCTCGGTGCGGCCGTCGATGGTGTGGGGGA 3957 29 100.0 32 ............................. CGAGTCATGGTGTGGGGCTCGGAGCCGGTGCT 3896 29 100.0 32 ............................. GTGGTCACCGAACAGGCCGTGGACCTGCCGTC 3835 29 100.0 32 ............................. ATCGGGTTCTTCGGCCAACTCCCGATGAGGCG 3774 29 100.0 32 ............................. GGGGTCAGCGCGACGATCAGGTCGCCGAAGGC 3713 29 86.2 0 ..................A...C.CC... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGGAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGGGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCCGGGGGCGGGGCCCGGGGGGCTGCCGCCAACAGTCCGGGGTGCGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAGACGGATCCCCCGGGGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTAAGGCCACATATGCCCGACTCTCAAGAAGTTCCCAAGAACGACCCCTCGGCCGGATAAACCCGCAGGCCACGAAGG # Right flank : TCCACACCCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCCATCGCGATACGCACGCGCACGCCCCCCATCCGCCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGGCGGGACGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLL010000432.1 Streptomyces sp. SID10692 contig-13000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1 30 96.7 32 .............................T TGACCTTCCGCAGGTTGCCGAGGCCGGCGGCG 63 30 96.7 32 .............................T TGACCCTCCGCAGGTTGCCGAGGCCGGCGGCG 125 30 96.7 31 .............................G CCCGGCCGACCGCGTCCGCCCCCGTCTTGAA 186 30 100.0 31 .............................. TCCTCGCCGAAAAGGCGTTCGACGGCGTGCT 247 30 100.0 32 .............................. CGGAGCACGAGAAGCCTGACCCCGACCCGGAC 309 30 100.0 32 .............................. TGCCGCTGCCGAAGGTGCTGCCGTACCCGGTC 371 30 100.0 31 .............................. AGGCGGCCAGGGCGAGGCCGACCCCAGGCCC 432 29 93.3 32 .....................-.......G TGAAGCCTGACAAGGCGAACAGCGGCGACAAG 493 30 96.7 31 .............................T ACAGAGAGGGGCGCCGATGCCGCACGTCACG 554 30 100.0 31 .............................. AGCTGCTTCGGGTCTCGGCGCACGAGGGCCA 615 30 100.0 31 .............................. GTCCTGATCCTCAGCTCCCGGCACGGGCTGC 676 30 96.7 31 .............................T CGGCCTGTGTCAGGCGACCGTGTTCGGACCA 737 30 96.7 31 .............................G ACAATCCGCGCGCCATGATGCTCCCCTCCCG 798 30 96.7 32 .............................T CCTCGGCGGACGCGTCGCAACCGGGGCAGGAG 860 30 100.0 31 .............................. GGATCATGGTGCCTTCGAGGCCGTCCAGGAG 921 30 93.3 31 ...........C.................A GCAGGGCGTCATGGTCGAGCCCGTCCGCCAG 982 30 96.7 31 .............................G ACCCCTTCCCCGGCGCCCGCGACCGGGCGAA 1043 30 100.0 31 .............................. CCGACAACCCCCGGGAAGAGCTGGGTGACCT 1104 30 96.7 31 .............................G GGCTCTTCGCGCCGAGGACCCAGCCGGGCGG 1165 30 96.7 31 .............................G CCGTACGCGCCTTCCGGCGCGCACAGGGGTG 1226 30 86.7 31 ............AT...........C...G GCGGCAGTGATCGGCGTACCTGTACGCCGCT 1287 30 73.3 0 ...........CGGT......C....TT.G | T [1297] ========== ====== ====== ====== ============================== ================================ ================== 22 30 96.1 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : | # Right flank : GCGGGTGTTCGCGGTGCCGCTTCGGTCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGGCACCGGGCCGCCCCGCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCTTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGTGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10732-11620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLL010001373.1 Streptomyces sp. SID10692 contig-16000029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10732 30 96.7 37 .....T........................ GGACGAGCCCGCGCTGCTCCCTGCAGGGGGCGAGGGA 10799 30 80.0 31 CCACC........................T CGCCCCCGACTTCTACGGGCACAGCTACATG 10860 30 100.0 31 .............................. GCATCGAGCACCACGAGGCCTACGACCAGGG 10921 30 96.7 31 .............................T TCTCACGGACCTCCTCGCCCCACAGGACGGT 10982 30 96.7 31 .............................C GGCACCTGGCCCGGATGAACGCCTACTTCGC 11043 30 96.7 31 .............................C GGACCTTGGCCGCTTCGAGCTGCAGGTGCGC 11104 30 100.0 31 .............................. CGGGCTTCGAGTACACCCTCGAAATGGTCGA 11165 30 96.7 31 .............................T TCACGGCCGCGGGAGTCGTGTCGATGTAGCT 11226 30 100.0 31 .............................. CCGAGGGCGTGGCCACCGCGGCCATCACCCC 11287 30 96.7 31 ...........A.................. CGTACGCCTGGCTCCAGCTGGAGGGCTACGT 11348 29 86.7 32 ....C........G...........-...T CAGGCGAACCGGAATTCGGTCTGCCCCGGCTT 11409 30 96.7 31 .............................C GGGGCTCCAGGATCCCGTAGGACACGGCCAC 11470 28 86.7 31 ........--..............A....A TCCCAACTGCCGTCACAGCGTCAGCAGTTAC 11529 30 90.0 32 ...........A.............C...T CTCGGCGGATGACCTGGCCCTCGGGATCGAGG 11591 30 83.3 0 .......................A.CAG.A | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 93.6 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGGACCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGGCCTCTGAAAGTCAACCGACGACGGTCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGAAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCTCAACCCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCCACGAAGGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGCGGGCAGAATGGCATCAGCCGAACCACACGTGTGACCACCTTGCCCCGGAGAGCGAGATATGCAGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : ACGAATGGTCGCGCGGCCCGCACCGTAGCCCGGACAAGAAACAGCCCTACAGGTCACGACGTTAGGTCGTCTCCCTCAACGTCGCTTCCCCATGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACGCGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCACGGGCGGTTCGGTCTCCGCGGTCCACAGGCGGGCGGCGTGCTCGGTCGTCTCGTCGTGCTCGCCCAACTCGCACAGCACATAGGGCTTGTCGTCCAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGGGCGTCGTCGTGCGGGAGGTTGGTGATGGCGGTGCATTG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11168-11016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLL010001215.1 Streptomyces sp. SID10692 contig-2000026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 11167 30 100.0 31 .............................. CAACTCTCTCCTCCTCCGCCCACTGCCCCGC 11106 30 96.7 31 .............................G CATGATGATCGGCTCGTGGGCCTCCGCGACG 11045 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : GTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCCGGGGCCCTCCCCGACGGCCTCTGCCACCCCTGCCACCACGCACACACCCACGACAGCGACCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGTATAACCCCCGCCCCAAGAACCCCCGTTAGGCAGAACAGACACACCGCATCCCCAGGACCAGCCCCACAGACAGAGAGCAGAACCGCAGCCCTCCCGCCGAAGCCAGGCCCAGATGAGACCGGCGGCGGGCAGAATGAGCATCAGCCGAACCACACGTGACCACTTTGCAACGGAAGGCGAGATATGCTGGTTTCCCAAGAAGTGAGTAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGGCACGAAGGTGGTCCCCGCTCACGCAGG # Right flank : CGAGCCACCCGACGCACCTGCCTCCGGCCCGGGAGCGTCCAGGTGCGGCCTCGCCCGAGGCCGCCACCCCCGACCCCGGAGCACCGCCCCTACGCTTCCGACGTCCCCGACACCGCCACCCGGAACCCCACCCCGATCGCCGCCAGGTCCTCCTCGTACGCGCCGTGGCGGCGGGCGCAGCGGGCCAGGTCTCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGGGGTCGAAGGCCCAGTCCTCGGTCTCCGGGACCCCGGCGGGCGCGCCCGGGTACGGGGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAACGAGCCGACCGGCGTCGTCGTGCCGACGCCCAGGTCCACCAGGTTGGCCAGGCCCGTGCGGTACTCCTCCCCCCACGGGAACTCCCTGCCGTCGTCGCCGCGTGCGGCACGTTCCCACTCGTCCTCGGTGGGCAGGCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1785-1450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLL010000115.1 Streptomyces sp. SID10692 contig-22000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1784 30 96.7 31 .............................A AGGAACGTAAGGACACGGACGCGCTGCAACT 1723 30 96.7 31 .............................C CCTCCGTGATCGTGGCCGTCGTGGACGACGA 1662 30 100.0 31 .............................. GGTCGAGCTGGACGACCGGGAAGACGACGAG 1601 30 100.0 31 .............................. GCGGCGGCGGCGTGACCCCCACGGTCTCGAA 1540 30 96.7 31 .............................G TCATGACCGTACGCAGGTTGTACGACGCCGC 1479 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CGAGAGCTGGCCTTCCTGCATGACCGCACGCGCGTCAATGAAGGCCGCAAGCAGACCTACGGCACACAGATCGCCGGCGTGAAGGACGGGGCACCAGTTCCGTGGCCTTGCGACGAGCCGGAACGCATGGACGAACTCCGCGCCAAAGTCGGCATCGAACCCTTCGACGAGTACGTTGCCAAGTTCTCAGTTGCCTGACGCCGACCCCGTCCGGCGGGTCAAGCCCTGAGGCTCACCAGCCATAAGCATGATCCCCCGGACGGGACCTCCACCGAGCCCCTCGTGAGGTGCAACAAACGCACCCCACCCCGGGGCCAACGCCTACGGAGGACAGAGCCTCACTTCTTCCATCGAAGCTGAGCCGGCGAAGCTGGCGGCGGACAGAATGGCATCAGCCGAACCACACGTGACCGCTCTGCGACGGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : GGTCGACGCACTGGAAGTAGCTGGGGTACGTCGTGGTCCCCGCACGCGGGTTCCCCGCCACAGCGGACGGCCGCAGGCAGGGCAGGCCCCGCCGTACGCGGTGGAGGCTGTGCCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCGCCGCGCCCAGCGGACTACGTCGCAGGTACCGGTTGGCCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCATGACGTCCTCCTCGGATCGCGCCGCCCGCAGGAGCGGGGTGACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCAGCACCCTGCTGATCGACGT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3336-2941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLL010000115.1 Streptomyces sp. SID10692 contig-22000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3335 29 93.3 31 -............................C GACTCCGGCTGTTCCTGCCCGTCCCCGTTCG 3275 30 100.0 31 .............................. CCGAGCGGCTGCTCGTGATCCTCCCGATCAC 3214 30 93.3 31 .........................C...C GGTCCGACACCGGGTACACGGCCCACCCCCT 3153 30 93.3 31 ..........G..................C TGCTCAAGCACGTCCTGGACGCCGGGAACCG 3092 30 96.7 31 .............................T CGGCGGCAGCGCTACGCCCCGCCACGGAACG 3031 30 100.0 31 .............................. CGTTGGCGTAGGCGCACCCCTGCTCCGGGCC 2970 30 76.7 0 ...T......T..............CTAAT | ========== ====== ====== ====== ============================== =============================== ================== 7 30 93.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : | # Right flank : TGTCCCAAATCGAGGAGCCTGCGGACCGACCAACGCAGTCGGTGCAGTGAGTGCGGTCGCCCTACCTGCTTCGATACGGAAATCTACAGGCCCCGCAACGAAGTTGAGCTGACGGTCAACGACCTCAACTGGCTCCGTTCGGTGGCTGCGCGATGCGACTAGCGCGCCTACGTCTTCCAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGGCTTCGGGGGTAGATCCATTATCGCGCTCCGCGGAGGCGCTTGTCACCGTTCTCCGGAATGATCTTTACGCCCGTTATGCGCTCATAGGGTTACGGGGATCGAGCACGACATACCAACCTGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTGACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCACGCCAACAGCGATGATTTTGCTGAGCAGTTGGCATGGCGCCGGCTTACCGCGCAGCACGGTGACCGGCTCGGTCAGATC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-862 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGLL010000381.1 Streptomyces sp. SID10692 contig-3000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 1 30 100.0 31 .............................. GGATACCGGGGATGGGCTCGCCGGTCCGGCG 62 30 100.0 31 .............................. CGTTCGACTGCTCCGGCCTGGTCCAGTACGT 123 30 96.7 31 .............................C TCTTTATCGAAGAGTCCGGTGACGGGTCGCT 184 21 70.0 0 .....................--------- - Deletion [204] 205 30 63.3 10 .............GT.G.CCA.G.A..GGA TGCGCGCCTT Deletion [245] 245 30 96.7 31 .............................G GTTCCGGCGGCGGCAAGGGCGGCTCGAAGGG 306 30 100.0 31 .............................. GCGTCGGGAGGTTCCTGCCGTGGATCAGGTC 367 30 96.7 31 .............................A GCTTGGCCTCGGCGCCGGACGGCCAGCGGAC 428 30 93.3 31 .................C...........A TCACCTCGGGCATGAGCCAGGTGAACTCGGT 489 30 96.7 31 .............................G CCAAGGACCTCCCCACCCGCTGAAAGGGGCA 550 30 96.7 31 .............................C GGTCACCCAGCACCACCAGCGCCTCGTCCGC 611 30 100.0 31 .............................. GGCCGAGCAGACCCGCCGGGCAATGCACGCC 672 29 90.0 71 .....................-......TG CGATGCGAACCGGCGCCTTGCCGCTGATCGTGTGGTCCCCGGAGGCGGAGGCGGAGGCGGAGAAGCCGAAG 772 30 96.7 31 .............................C CCGGGCGGGCGCGGACCTCCGTCTACGCCGC 833 30 93.3 0 ...........................G.G | ========== ====== ====== ====== ============================== ======================================================================= ================== 15 30 92.7 30 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : | # Right flank : GCTCATGAGTCCCCGGGCTGATGCAAGGCCCGCCGGGATACGGGATTCGCATCGATTCGACAGGTACGCGCATCCCATCGAAACCAAGTTGATCAATTAAGTGCACTTGTATTCATCCTCGGACATCCAGCCCACTAGTGACCGCGCCGATGTCCAATACGGCCATGAGCCGCGATCTTCCGGAAAGCCATTCGGCCTTCGCCTGTCTGTCCGACGCCTCCCGCACCGCCTGGGGCAAGCACGATCGGACGACCGAGCAGTGGCTGCCGCTCTGGCGGCATATGGCGGACAGTGCCGCTGTCGCGGGGCGGCTCTGGGACGGGTGGGTGCCCGACAGTGTCAAGGCGCTCGTCGCGGACGTGTTGCCGCAAGGGTCCCCGGATGCCCGACAGGTCGCCGTCTTCCTTGCGTGTGTCCATGACATCGGCAAGGCCACCCCCGCCTTCGCCTGCCAGGTGGACGGGCTCGCGGATCAGATGCGGGACGCCGGGCTGGAGATG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.51, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //