Array 1 164533-162673 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVN01000007.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5468 NODE_7_length_321011_cov_73.694612, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164532 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 164471 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 164410 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 164349 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 164288 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 164227 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 164166 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 164105 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 164044 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 163983 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 163922 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 163861 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 163800 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 163739 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 163678 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 163617 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 163556 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 163495 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 163434 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 163373 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 163312 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 163251 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 163190 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 163129 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 163068 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 163007 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 162946 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 162885 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 162824 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 162763 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 162702 29 96.6 0 ............T................ | A [162675] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183085-181105 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVN01000007.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5468 NODE_7_length_321011_cov_73.694612, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183084 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 183023 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 182962 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 182901 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 182840 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 182779 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 182718 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 182657 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 182596 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 182535 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 182474 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 182413 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 182352 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 182291 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 182230 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 182169 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 182108 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 182047 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 181986 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 181925 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 181864 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 181803 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 181742 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 181681 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 181620 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 181559 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 181498 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 181437 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 181376 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 181315 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 181254 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 181193 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 181132 28 93.1 0 ............T............-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //