Array 1 3581734-3579569 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007222.1 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1903 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3581733 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 3581672 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 3581611 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 3581550 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 3581489 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 3581428 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 3581367 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 3581306 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 3581245 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 3581184 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 3581123 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 3581062 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 3581001 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 3580940 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 3580879 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 3580818 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 3580757 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 3580696 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 3580635 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 3580574 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 3580513 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 3580452 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 3580391 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 3580330 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 3580269 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 3580208 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 3580147 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 3580086 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 3580025 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 3579964 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 3579903 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 3579842 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 3579781 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 3579720 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 3579659 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 3579598 29 96.6 0 ............T................ | A [3579571] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3599927-3598496 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007222.1 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1903 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3599926 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 3599865 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 3599804 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 3599743 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 3599682 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 3599621 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 3599560 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 3599499 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 3599438 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 3599377 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 3599316 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 3599255 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 3599194 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 3599133 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 3599072 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 3599011 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 3598950 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 3598889 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 3598828 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 3598767 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 3598706 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 3598645 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 3598584 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 3598523 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //