Array 1 272-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPIH01000155.1 Chlamydia abortus strain 8630, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================= ================== 271 29 100.0 29 ............................. TTGCCATATTCCACGTCCTACAGTGGACA 213 29 86.2 28 .....A........CAT............ CTCGCCATATTTCACGTCCTAAAGTGTT A [208] 155 29 96.6 29 .............G............... TCGCATAATTCCAGGTCCTTCAGTGTGCA 97 29 82.8 27 ....A......T..C.T....T....... GTCATTTTTCAAGTCGTCAAGTGGATG AG [71] 39 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================= ================== 5 29 93.1 28 TTTCTCATTTTCCATGATTTTCAGTTTTC # Left flank : TCATTTTTCAAGTCGTCAAGTGGAT # Right flank : CTTGCCATATT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCTCATTTTCCATGATTTTCAGTTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [7-7] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1-263 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPIH01000195.1 Chlamydia abortus strain 8630, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================== ================== 1 29 100.0 29 ............................. TTGCCATATTCCACGTCCTACAGTGGACA 59 29 86.2 30 .....A........CCT............ CTCGCCATATTTCACGTCCTAAAGTGTGTA A [66] 119 29 89.7 29 .....T......TG............... TCGCCATATTCCAGATCCTTCAGTGTGCA 177 29 86.2 27 ...........T..C.T....T....... GTCATTTTTCAAGTCGTCAAGTGGATG GA [202] 235 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================== ================== 5 29 92.4 29 TTTCTCATTTTCCATGATTTTCAGTTTTC # Left flank : | # Right flank : TTGCCATATT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCTCATTTTCCATGATTTTCAGTTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //