Array 1 36074-37252 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOOL01000079.1 Bacillus thuringiensis serovar xiaguangiensis strain BGSC 4BN1 contig000079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================== ================== 36074 32 100.0 35 ................................ ACGATCGCTTTTGTAGCAAACACCCACGAAATGAA 36141 32 100.0 34 ................................ AAAAGTAGCGGTAGGTTTTACAGCAACAGATTTA 36207 32 100.0 34 ................................ CTAACTTATAAGGCATAGGTGCAATAAAGGTAAC 36273 32 100.0 34 ................................ AATTACGTTGATTCGCTTGATATCAGATGTTCTT 36339 32 100.0 34 ................................ ACTCACGGATACGTAATTATAAGTGGGATATAGA 36405 32 100.0 34 ................................ TCTAAAAAGAAAGCATTAGCAGCAGAAGAAGGAT 36471 32 100.0 34 ................................ AGTTGAGTGAATTAATGCTCGTGAGTGATTGTAC 36537 32 93.8 34 ...........A......A............. TGTATGATTACCTTAGCAAATTCAACGATAAGTT 36603 32 93.8 34 ...........A.......T............ TTATCTTTATCTACTGCAACTACACCAAAATTAT 36669 32 96.9 34 ...........A.................... CTAAAATTAGATTCCATGACTTACTACATACCCA 36735 32 93.8 34 ...........A.A.................. CACATTAAGAATTTTGGAACAAAGATTGTAAAGC 36801 32 93.8 33 .........C..............T....... ACTCCTATTCATTTTTCAAAGATCGTGCTTCAA 36866 32 90.6 33 ...A.....C.........T............ TACACAGACAAAGAGGGCAACCCTACTCGCCTT 36931 31 96.9 34 ..............-................. CCCTGCTGATGCAACATCGCTACCTACATTTTGT 36996 32 93.8 35 .........C..........A........... TCAGACGGCTTGTCTTTTTCCGTAGGCTTATCTGT 37063 31 87.5 34 ......T.-..........TA........... TACCTAGGGTTTATATTTATCTGGAAAGCTCATA 37128 32 96.9 62 .....................A.......... GGGGATATGCCAGGCGTTTGGCAAAGTGTTATTGGTTTATCAGGAGTCATTGACTTGTCATG 37222 31 87.5 0 .........C.-.A......C........... | ========== ====== ====== ====== ================================ ============================================================== ================== 18 32 95.8 36 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGAGTTAGCAAAATAAAGGGATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTGGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGAATCAATATATTAAGGGTATTATGAAACTATACATTTTGGTTATTCAATTAGGTAATAGCTATGAAAATAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGCCCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTTGAATTCTCATGCTTTATAATGGTGATTTATGATTTTTATACAAATTACTTTATTAAATAAAAACATTTGTATATTTTTGGATAAAACTAACGTATTTTTGGTTGATTTCGAACACAAATCGGT # Right flank : TTAGCAATGCTCTGGCTTTAAAACGCTCTGCAGATGTAGATACTCAACTGGAAGTATCTATATCTGTAGTATCTAACACACATGTTATAAACATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGGCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATCGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATATCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCT # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 45611-46370 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOOL01000079.1 Bacillus thuringiensis serovar xiaguangiensis strain BGSC 4BN1 contig000079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 45611 32 100.0 35 ................................ AACTTGTCGTTTAGTTTGAGTCCCTGTAGTTCCGC 45678 32 100.0 33 ................................ TCGAAATGGTTTCCGAGCTTGGTTAGAATTAGG 45743 32 100.0 34 ................................ ATATACGCCTTGTGTATCACCTGTTAGACTCGAC 45809 32 100.0 34 ................................ CATTCCACCCCATTGTTTGTCTTGGACACCTTTT 45875 32 100.0 34 ................................ AATTAAATCATCAATTTCGTCATCTAAAGCATTA 45941 32 100.0 35 ................................ GCTGATGTACTCGCAATTATCCCTTGTGACGTATG 46008 32 100.0 34 ................................ AGGGAAGATGGCTGAATACTATGAGTTACCACCT 46074 32 100.0 34 ................................ TATTATGTTAGCTGAAACGATGGCTAAAGAAATA 46140 32 96.9 34 ...........................A.... GTCCAGCATGTGCCTTGGCAAACTCAGGAGGAAC 46206 32 96.9 35 ...........C.................... TTAGATTATTTCAATGCAAAAATAGAAGTAAACAA 46273 32 93.8 34 ...................T...A........ ATTAGACGAGATATATCCACAGAAGAAGAATTAC 46339 32 87.5 0 .......T............C.AA........ | ========== ====== ====== ====== ================================ =================================== ================== 12 32 97.9 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGCACAACTAACAGTGTTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGATGCAACTCAATTTGCTACTTTAAAGATGGAATTAATTAAAATTATTAACGAAGATGAGGATAGTCTTAGATTTTATCAGTTAGGTAATAACTATAAAAATAGGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATAAAATTCCTCGTGCATTCGCACCTGAATTTTCATAATTTATGAGCGAAGTTTAATATTTTTTATACAAATTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAGTGTATTTTTGTATGGTTTTAAACAAAAATCGCT # Right flank : TGAAATTACTTGCTGCCTTATCTAGATTACTTTCTTCGCATCTCAGGTGTGTGGAGTAAGACTGATAAAATAATTGATAGTAATTTAGTGCCTCTGTTGGAGAAAGGGGACCTGTTTCAATTCATAAAGCAACGAATGTTGATCCAATTGACATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCATGGGAAGGATAAAGTTTTAGATACGATGGGGATGAAGCATCGTGTTGATTTCGCAGTCTATGTTTGTTGGTGGGATCATCATTCAAAACCTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACAAAAAACAATCAATGATTATACTGTCTTGGTACATGAATTAGATGGTTTAAAAGTTGAGATTATTAAAGGAATGTAATAAAAAGCGTCAGAATAGTTGAAAGAAAGTATCCTTATAAAGATATACCCTATCAATTTATTAAAGGAAAGTCGCATT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 47528-47755 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOOL01000079.1 Bacillus thuringiensis serovar xiaguangiensis strain BGSC 4BN1 contig000079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 47528 32 81.2 33 ......T..CTTGC.................. TACAAAATTATGAAGGAATATGAAAATACCCTC 47593 32 100.0 34 ................................ TCAATTAGGTGCAGGTACACACTTGGAAGTATTA 47659 32 96.9 33 ...............................G CCGTTAACGAAAATATAAAAAGCATACGTGCCG 47724 32 65.6 0 ....T.T..C.T.....A.....AG..AGG.C | ========== ====== ====== ====== ================================ ================================== ================== 4 32 85.9 41 GTCGCACCTTAAATAGGTGCGTGGATTGAAAT # Left flank : TGATCCAATTGACATTACTAGTATGCAGATTACGAAAATTATAAATTCTGAGCATGAGAAGGATAAAGGTTCAGATACAATTGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGAGGAGAAGATTAAAAATGCACTGGTTACACTGTTTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAAGTATAAAAGTACATAAAGTTTGTTGGTGGGATCATAATTCAAAACTTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGATTATTAATGAAATGTAATAAAAAGCGTCAGAATAGTTGAAAGAAAGTATCCTTATAAAGATATACTCTATCAATTTATTAAAGGAAA # Right flank : CTGGTAAGATGCTTGATAGTAATTTAGTGTCTCTGCTGGAATAAGAGGACCTGTTTCAATTCATACGGCCACAAGTGTTGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCTGGGGAAGGATAAAGGATCAGATACAATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATCAATACACAGTTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAAATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAATAATTGATGACTATAACATTTCGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGG # Questionable array : NO Score: 6.35 # Score Detail : 1:0, 2:3, 3:3, 4:0.30, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTAAATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //