Array 1 33333-34635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYGS010000004.1 Lactiplantibacillus sp. 7.2.4 assembly_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 33333 29 96.6 32 ............................C TGCTTGAGCTTGGCTAAACGCATTATCAGCTG 33394 29 100.0 32 ............................. TATGTTCAAAAAATTGAAAATAAATACGGAAC 33455 29 100.0 32 ............................. ATATGGTTTCTTCCTACGGGAAAGTTAAATCA 33516 29 100.0 32 ............................. CAGTAACTAATGGCGACAATCAAGTTACAGTA 33577 29 100.0 32 ............................. TGCGATTGGGTTGATTAACCATGTATCTAATA 33638 29 100.0 32 ............................. ATATTATAACACATAACATCATCAATGCAATT 33699 29 100.0 32 ............................. TAACAATGTGAGTTGTTGTATTGTGAATGAAA 33760 29 96.6 32 ............................C TTGCATCCGCCGTCAACTTGGTAATAAAATCA 33821 29 100.0 32 ............................. TATATCGATTTGGTGGCTTTATTTTCAAAGCT 33882 29 100.0 32 ............................. ACAACAAGTATTGCGCGCCGTCACCGCCGACC 33943 29 96.6 32 ............................C GAATTAATTTGAAATCCATCTTGCTCACGATC 34004 29 100.0 32 ............................. CTGGAGGGCAATGGACTGGAAAAACGTTACGG 34065 29 100.0 32 ............................. AACGACAATGCAGACCAAACCAATCAGACTGT 34126 29 93.1 32 ..G.........................C AGCACATTGATGGATGTGCAAACAGCGGTTCA 34187 29 100.0 32 ............................. GACGCTATGAAAATCTTAGCTTATGACAATTA 34248 29 89.7 32 ..G....................A....C ATTGCACATGTGGCCAAAACGTCGACGCCGTA 34309 29 82.8 34 ..G............A..A..A...C... TAACGAAACCGTATTCTGCTGATTTGTCCTGGCA 34372 29 89.7 33 ..G........A...A............. TAACACGCCGGTAGTCCCGTTTTTGGGGGATTG 34434 29 82.8 32 ..G...T........A.....C......C ATGACTGCGCACTATACTGAGTCAGCCCGACT 34495 29 75.9 32 ..T.....T......A.A..A.....T.G AGGTGCACTCTCGTGAGAAGCGTAGACGCTAG 34556 29 82.8 22 ..G...TT...........A...C..... CGCTGAATCGATATCCACCATT Deletion [34607] 34607 28 82.8 0 T..............A......A.-..T. | C [34628] ========== ====== ====== ====== ============================= ================================== ================== 22 29 94.1 32 CTATTCCCCGTGTATGCGGGGGTGATCCT # Left flank : ATATTAGACTGCCGGGGTATTTATAATTCATTGCACACTAATTTTCGCCACAGCGCTAGTAACTGGAACACCAGCGATAAACGCTTGTACGGCGTGAAACATATGGCTAGTCTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGAATGCTCCCCCAAAAAACATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGCAGCAAGCTATTGGATTGATTTTTTAAAATTCCGGATATAGTTCAAACATTCACGCCTATTAAACGTGGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGTTTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAACAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATAACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAATCAGCATTGCTATTGTCTCTAACACATACAGGACTATTTCAGCATTTATACAGAGCGATCAACAACATCACTTCATCAACAGGGCAATTTGACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTATGAATCAAACTTTCATTACACAAATAGTGTATCTCTCAGATGTGTTCTAAATTTTTAACTTTTCTACCTTACTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTGAATTCTCAATTTCGTATGCTGACAGTACTGTCGCGAGCCGATAGTTATCTAAAAACGCATTAGTACGCTTCACAATTGGCATCAAATCCATGGTTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCCTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGCATT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37253-39599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYGS010000004.1 Lactiplantibacillus sp. 7.2.4 assembly_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 37253 28 100.0 33 ............................ TACTTAACGTGTAGAAAAACATTTGAACGGCTG 37314 28 100.0 33 ............................ CTGCATTAGCACTGCTGCTACCTAAGTCCCTAC 37375 28 100.0 33 ............................ TTAAGTACGCATTGCAGTTAGTAGCTAAGCATG 37436 28 100.0 34 ............................ TGAATTTGATTATCCAATCTCAGCTATTCGTAAA 37498 28 100.0 33 ............................ TAGTATGTTTAAACTTTACGATTATCAGCAAAG 37559 28 100.0 33 ............................ TAACCGGCTCTGTTCTAGCGGTGCCCTCAACAG 37620 28 100.0 33 ............................ CAAGCCTAAAACGACTAGAATGAACGGTGTTAA 37681 28 100.0 33 ............................ TTGATGCCTAGTTGGGCAGCCTTGTTGGCATCA 37742 28 100.0 33 ............................ CATCAAACATGGAAATGCCGCTGATTACGAAGT 37803 28 100.0 33 ............................ CACTCTGTTCTGTTGGTAACTTATGGAATCTGT 37864 28 100.0 33 ............................ CGAATTGGCGGAGCTATGCAAAAAATCGGTAAA 37925 28 100.0 33 ............................ CTTAAGTGACCTACACATTGGAGAATTAGACGA 37986 28 100.0 33 ............................ CTATCAAGTAAGATGTCGTATGTTCTAATTGCC 38047 28 100.0 33 ............................ CGCAGCTAAAGATATTTTAGACCGCTCAATGAG 38108 28 100.0 33 ............................ TAATAGGACTTGGTTGGGATCAAGCAACTGCCA 38169 28 100.0 33 ............................ CAATCATAGCCGCAAACGACGCTACTAATGCTG 38230 28 100.0 33 ............................ TAAACAGATGGGGTAGAGCCGGCTGTGTTCCAT 38291 28 100.0 33 ............................ TATAGGAAGGAAGAAAATAATGAATAATATTTC 38352 28 100.0 33 ............................ TACAATATAACCATTTTCTGCCAATGCGACACG 38413 28 100.0 33 ............................ TAGGTATTTGTCGGGAGACATAGTCGATCGCCA 38474 28 100.0 33 ............................ TCAATCAGCTAAGGTAATCTCACAACAAGTCGC 38535 28 100.0 33 ............................ CCAAACACAAGCAGGCTAATTTGATTTATCAGG 38596 28 100.0 33 ............................ TTAAAGACGAGCTACCACTGGTTGTAGACACGT 38657 28 100.0 33 ............................ CAGGTTAAACGCAGTTAACCGTGTATATCCATT 38718 28 100.0 33 ............................ TAGTGACCCGATGGATAACCGGGCTTGTAACTT 38779 28 100.0 33 ............................ TCTGACTAGCCGTCTGTGTTTGATAAGTTGAAA 38840 28 100.0 33 ............................ TTTCATAACTGTACCTAACCTTTCTTTACTATG 38901 28 100.0 33 ............................ CCATATGCGAATAATCCACGGAAAAACGATGAA 38962 28 100.0 33 ............................ TAAAATAGCCAATTTGCTGTTTCGTAATTCAGC 39023 28 100.0 33 ............................ TAATGACATCATATAGTTTTACGAGAATTTCAA 39084 28 100.0 33 ............................ TATGACGCTGACGAGGGTATTGGTTATCCGATT 39145 28 100.0 33 ............................ TAGCAATGCAAACGCTTAGGGATTATGCGGTCG 39206 28 100.0 33 ............................ CGTTAACAGCGTCATTATTACTAACACTCACGC 39267 28 100.0 33 ............................ TAGTTGCAAATGTACTGTCCTTTTGAGTAGTTG 39328 28 100.0 33 ............................ TATAATTCGTGCACTAACGAATATTGGCGTGAC 39389 28 100.0 33 ............................ CGACCAGTTATACTATCTATCCGTTTTAGATGA 39450 28 92.9 33 ............C..A............ TATGAATTGGTACAACCGCGACGAAATTCCATT 39511 28 85.7 33 ..A.......T.C..A............ TCCAATGTGACTAACTGAAATTTCTACGCTAGT 39572 28 78.6 0 ..A.......T.C..A..........TT | ========== ====== ====== ====== ============================ ================================== ================== 39 28 98.9 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTTGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATTTAGGCTTCACAATTATTAAGCGCTTACATTTTATTAAGAACATTGCTGACAATCCTGAATTATACTGACAAGAAATCATCGACTTTCATCCGTATATTTTCGTCAGAACCCTAAACTGCTTGTAAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTGATTCTATACTTCTAATATTAGCATTCAGTGTTTGAATATACATCTATTTTTGGAAGGACTTTGATGGATTTTTGATAAATTATGACGACTAGTTTGTGTCAAGACAGTCTGATATGTCCAGTCTTGGAGTTTCCCTATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGATACTTAGCCAATTTTGGATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : TTTATACAGTTTTTAGGAGGGCAAGGATAATGGTTGAAATTATAGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATACCCTGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTAAAAATTAGCAGAATTATCTGGGAAGATTCAGTCCTTGATAAGGACAAAAATCACGTGTTTACAAGATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTGTTTTTGTAAATTCACGGCAAATTTTGAGTAAAAGAAAAGTCATACCATATTTAGAGAAAGTCTTGTTACAGTTTCTATAGATAATGAGAACTGTACCGCGTGACCTTTACGCTTGAAAGTGCAAAGAAAGAATTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 119044-120232 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYGS010000005.1 Lactiplantibacillus sp. 7.2.4 assembly_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 119044 28 100.0 33 ............................ TTAATAAAATCACAATGGATAGTGGCGAAGTGG 119105 28 100.0 33 ............................ CACCTGATAAAATCATGAAATTTATTACGCATC 119166 28 100.0 33 ............................ CGAGATCGTATCCAGTAGTTGTCTTCAATGGAG 119227 28 100.0 33 ............................ CGTACTGTAAGATCCGTCGAAACTAATAACGAG 119288 28 100.0 33 ............................ CCGAAGATGACGATTAAGAAAATGCAAAGAGAA 119349 28 100.0 33 ............................ CGTTTTGTATGCCGCCTGTGTCAATCGCAACAT 119410 28 100.0 33 ............................ TGGTAATCCCGCGGAATGACAACATGCCGTTTG 119471 28 100.0 33 ............................ CGACTATAGAAGCCATTGAAGGCCTGTTAGATA 119532 28 100.0 33 ............................ TATTCCTCAAACCACTTATGCTAGCCAAGTTAA 119593 28 100.0 33 ............................ CACCAGAACCAAATCTGTTGAAATATGCCTTTC 119654 28 100.0 33 ............................ CAAATGATAATTTAAGCGATAAGTAGGCTAGCG 119715 28 96.4 33 ........T................... CCGATAGTATTCTTGCGCTTCCAGTAAGCTAGT 119776 28 96.4 33 ..........C................. TAAAATTCCCAGGGATCATCGATAACGTCCGCC 119837 28 96.4 33 ..........C................. CTGGTTCTCACGCCAATCTCCATCACGATGCAT 119898 28 100.0 33 ............................ CTTGAATGCAAGAAGGAGGTAGCTGACAGTGGA 119959 28 100.0 33 ............................ TTACATTGGACTTCGCATCGTTGGTCTTGTCAT 120020 28 92.9 33 ..........C.......A......... TGGTTTAAAGATTCGAACGGAAATTTAGACTTT 120081 28 89.3 34 ........T.C..........A...... TGGCTTTTGTCAGCGCTTCTTCGCAGAACACTTG 120143 28 92.9 34 ..........C......A.......... CCTATTTCCACAATCAAATTCATCTACTAGATGA 120205 28 92.9 0 ..........C....T............ | ========== ====== ====== ====== ============================ ================================== ================== 20 28 97.9 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : ATCGCCTGCTACAACAAGTCGGCGCACTAGTTGTGGCTCAGACGGCAATTCTGGCAGAAGGTGCAGCTGTCACACGAACAGACATTGAATTTTTGGCGAAATTGCCACTGTTTGATGGAAATAACTCAGAATAATATAACTAGTCGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGTAATTTTGTAGCCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTTAATTATAAATTCGTTTATACGGCAATTTTGAGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATGATAATCACGCCATACTTTCATGGAAGATATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAGTAAAACATAAAACATTATTATCTTAGACCACTTAAATCTGCGCAGGTGTCCTACAACAAATCAGCTGGTTCCGGTTAAAATTAATGTTCATGCAGCAACCACCCCTCTCCAACACACACAGAATATTCAGAAAGTACGGCTCTTGTCGTACCCACCGCTCACAGTCATTCGCAAACTCGGCGCAAGGTAAATTAATTAGAATCCAGAGCAAAAAAAGCCGCCATATCCAAAGATATGACGACTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCCTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACCGCCATCATTTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //