Array 1 3018658-3016797 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMT01000013.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL00274 2014LSAL00274_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3018657 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 3018596 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 3018534 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 3018473 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 3018412 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 3018351 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 3018290 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 3018229 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 3018168 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 3018107 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 3018046 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 3017985 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 3017924 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 3017863 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 3017802 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 3017741 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 3017680 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 3017619 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 3017558 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 3017497 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 3017436 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 3017375 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 3017314 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 3017253 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 3017192 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 3017131 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 3017070 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 3017009 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 3016948 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 3016887 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 3016826 29 93.1 0 A...........T................ | A [3016799] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3035936-3035298 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMT01000013.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL00274 2014LSAL00274_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3035935 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 3035874 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 3035813 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 3035752 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 3035691 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 3035630 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 3035569 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 3035508 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 3035447 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 3035386 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 3035325 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //