Array 1 28526-27886 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYM01000041.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R1864 NODE_41_length_37172_cov_44.878762, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28525 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 28464 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28403 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28342 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28281 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 28220 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 28159 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28098 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28037 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 27976 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27915 29 96.6 0 A............................ | A [27888] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26-1639 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYM01000152.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R1864 NODE_152_length_9093_cov_38.370436, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 87 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 148 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 209 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 270 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 331 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 392 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 453 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 514 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 575 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 636 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 697 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 758 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 819 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 880 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 941 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1002 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1063 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1124 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1185 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1246 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1307 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1368 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1429 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1490 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1551 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1612 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAGAACAAATATATAGTTTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //