Array 1 1305-219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGCM01000101.1 Bacteroides fragilis str. 1007-1-F #8 gbf10071F8.contig.100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 1304 35 100.0 33 ................................... CACAAACCGCCGATAGTGAATGGACTAAGCAGT 1236 35 100.0 36 ................................... ATATGATAATCGACTGGGAATGTGCTAGATACACTA 1165 35 100.0 36 ................................... TCAAGTCACTTCCGAGGGTGCGCAACTGATTGATGT 1094 35 100.0 33 ................................... AAAGAACTTTGACAGCAGAAGGAAAAGACATGA 1026 35 100.0 35 ................................... TCAGGGATTTGAATGAAGACCCTCACAGCTATAAT 956 35 100.0 37 ................................... GAAACCGCAATGGCACAGTATCCCGGACAGGTTTTGT 884 35 100.0 38 ................................... AATTCTTTACAATGACAAAATCGTCACTTTAGATGAAA 811 35 100.0 36 ................................... TTTTATCTGTTCTTATCCTTATATCGCAATAGCGAT 740 35 100.0 34 ................................... AATTATGAATCTTTAATGGCAGTAGACCCCTTGT 671 35 100.0 37 ................................... CTTCAATGAAATCATTGAGTGGTTATTACCAACTGGG 599 35 100.0 35 ................................... ACCAATGGGGACGTACAGTGAATAAAATCGCCAAT 529 35 100.0 30 ................................... TTCATCCCTAGTAAAATCAGTACAGCTAAA 464 35 100.0 35 ................................... TTGAAGAAACAGGCAAGTTGCGAACATGAGTTTCT 394 35 100.0 35 ................................... AACGATATCCAGAGCGACATACAGCTCAATGGAAT 324 35 100.0 36 ................................... TAAAAGCATTAGCGACAAAGATTGGAAGTGACAAAT 253 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 16 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAATAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : TATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 842-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGCM01000106.1 Bacteroides fragilis str. 1007-1-F #8 gbf10071F8.contig.105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 841 29 100.0 35 ............................. ATCAAGTGGTCAGCCTTAAATCTGTTGCAAAAGGA 777 29 100.0 35 ............................. AGCTGAAGGCTACCACCTCCAAGTTCGCCACTACC 713 29 100.0 35 ............................. TATTTATAACTCGGTTTATTGCATGGATTCCCGCA 649 29 96.6 36 .....................T....... TTTCATTATCCTTTGGTGAACTTTTTGATTTTCACT 584 29 100.0 36 ............................. CGGCATACCAGTATGTACCCTTCATCCCTTACCTCC 519 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 456 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 393 29 100.0 37 ............................. GTATATCCTTATTGTTATACTCGTCAAGCATTGCAGG 327 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 262 29 96.6 34 .....................T....... TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 199 29 100.0 36 ............................. TGTATACATATAGAACATAATAATGCTTGTATCCGC 134 29 100.0 34 ............................. CTGAGTATTTCGACTTGTATTTCTTTGAATTCCA 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 99.5 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : TTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAG # Right flank : TTACTCTAACTGATTATCAGCTGTAAGTCCGGTTAGTATTAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 410-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGCM01000107.1 Bacteroides fragilis str. 1007-1-F #8 gbf10071F8.contig.106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 409 29 100.0 35 ............................. ATCAAGTGGTCAGCCTTAAATCTGTTGCAAAAGGA 345 29 100.0 35 ............................. AGCTGAAGGCTACCACCTCCAAGTTCGCCACTACC 281 29 100.0 35 ............................. TATTTATAACTCGGTTTATTGCATGGATTCCCGCA 217 29 96.6 36 .....................T....... TTTCATTATCCTTTGGTGAACTTTTTGATTTTCACT 152 29 100.0 36 ............................. CGGCATACCAGTATGTACCCTTCATCCCTTACCTCC 87 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 6 29 99.4 36 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTGGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : TCAAGTCTGTGGGAAGACCGTACATAACTACGTGCGTATTAATTGTACCTTATGGAATT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 438-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGCM01000277.1 Bacteroides fragilis str. 1007-1-F #8 gbf10071F8.contig.276, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 437 29 100.0 35 ............................. ATCAAGTGGTCAGCCTTAAATCTGTTGCAAAAGGA 373 29 100.0 35 ............................. AGCTGAAGGCTACCACCTCCAAGTTCGCCACTACC 309 29 100.0 35 ............................. TATTTATAACTCGGTTTATTGCATGGATTCCCGCA 245 29 96.6 36 .....................T....... TTTCATTATCCTTTGGTGAACTTTTTGATTTTCACT 180 29 100.0 36 ............................. CGGCATACCAGTATGTACCCTTCATCCCTTACCTCC 115 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 52 29 93.1 0 .........................G.C. | A [28] ========== ====== ====== ====== ============================= ==================================== ================== 7 29 98.5 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : TTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAG # Right flank : TAAGGAAGATCTATATTTAAAGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //