Array 1 68015-65118 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUU02000014.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0186 NODE_14_length_90726_cov_13.389795, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68014 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 67953 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 67892 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 67831 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 67770 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 67709 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 67648 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 67587 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 67526 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 67465 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 67404 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 67343 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 67282 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 67221 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 67160 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 67099 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 67038 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 66977 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 66916 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 66855 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 66794 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 66733 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 66672 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 66611 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 66550 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 66489 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 66428 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 66367 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 66306 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 66245 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 66184 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 66123 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 66062 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 66001 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 65940 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 65879 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 65818 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 65757 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 65696 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 65635 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 65574 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 65513 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 65452 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 65391 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 65330 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 65269 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 65208 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 65147 29 96.6 0 ............T................ | A [65120] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 85405-84766 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUU02000014.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0186 NODE_14_length_90726_cov_13.389795, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 85404 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 85343 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 85282 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 85221 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 85159 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 85098 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 85037 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 84976 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 84915 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 84854 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 84793 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //