Array 1 4078918-4078168 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007744.1 Pectobacterium atrosepticum strain JG10-08 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4078917 28 100.0 33 ............................ TGAAATGATCGCTGCACGTCCGCAAGGTCATAA 4078856 28 100.0 32 ............................ TGTTGAAGCTCGATCGATACTGGAAGGTACTT 4078796 28 100.0 32 ............................ GAGGTAAACCCTGATGAGTTGCTGGCTGATTT 4078736 28 100.0 33 ............................ TGATAAGCCAAAGACCACGCATACATGGCCTTA 4078675 28 100.0 33 ............................ GCAGGGTGTTCTGCGTTATCTGCGCGTCAACTA 4078614 28 100.0 32 ............................ TGCATCTTGCGTTGAGTCGAGTTTATTCAGTT 4078554 28 100.0 32 ............................ TTATTGAGTACGCCGCAAAACTAATTAAATAA 4078494 28 100.0 32 ............................ AAACTTCTAATGTCGTTCATAGTGGATAGCGT 4078434 28 100.0 32 ............................ AGAGAAACCGTAAGGAGTCGCCATGTTCCATT 4078374 26 92.9 32 ..........--................ TTGCTGATTGGAGTAAGCACAACGTGCATCAT 4078316 28 96.4 32 ...........C................ AAGCGTAGTACAGAGCAACCCCGAGGCGGACG 4078256 28 96.4 33 ...........C................ ACAGACAGAAGGTGCATAAAAAGGAAGCCTCAC 4078195 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTACCCGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCACGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGTAATAGATAATAACCATGACGCCAGCGAAATAAATCGCAAGCTAACTATTTGATAAGGAAAAATATAATATTCAGAAAACTGATGAAAATCAGCCTATCACAGTTGTATGTGAAAAATGATGACCGCAAAAAATATTACCCAAACGTAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : CGGTACTCAGCGCTGCTGTCTGGTTATTATCGAGGCTGCACTGCGCCATCGCTCAATGCCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTTTCTTTTGGTGCGAATGGAAAATTGCAGATTGGACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAGTGAGTCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCCTCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4089018-4089586 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007744.1 Pectobacterium atrosepticum strain JG10-08 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4089018 28 100.0 32 ............................ AGCTCCGACCGACATGCGCTTAAAGGCGGCGA 4089078 28 100.0 33 ............................ ATGCAGATATTGTAACTAAGCATCATATTGCAT 4089139 28 100.0 32 ............................ TGTAGGCCATATAACAAATACTCAAAGATAAC 4089199 28 92.9 32 .............T......T....... TTGCGATTGGCACCGTTAACCGCTCAGTGACC 4089259 28 92.9 32 A............T.............. TCCAGTACTCAGGATCGTGTTGGTACGATAAA 4089319 28 96.4 32 .............T.............. AGTTCTGACACTCGTTAAACGTCATAACGCGC 4089379 28 100.0 32 ............................ GAAATATCCACCTGGACACTGTCCATAAAGAA 4089439 28 96.4 32 .............T.............. ACGACGGATAGTCTCTGTCTGACGAACGCAAC 4089499 28 96.4 32 .............T.............. GCCCTGAAAAAAATGGGTTGTGATGACCATGC 4089559 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 10 28 95.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCTGCGTCAGCACGCTCTTCTTGCAGAAAAGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGCAAGCGAATAGCACGGTTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCAAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTACCACAGGGTTGGCACCCTTTTTTCATGGACGCTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAGAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAACG # Right flank : TTTATCGAGATAAGTCTCTAGCACGGCTCACCTCAAGGGAGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTAAGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //