Array 1 83920-85126 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQEZ01000239.1 Escherichia coli strain NOR5_2 NODE_1995_length_230070_cov_41.786144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 83920 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 83981 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 84042 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 84103 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 84164 29 100.0 39 ............................. NNNNNNNNNNGTTGCGCGCACTAAGAAAAACAGGTTCGA 84232 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 84293 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 84354 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 84415 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 84476 29 96.6 37 ............................N NNNNNNNNNCCGTTCAGTATTGCCGGTGTCAGCAAAA 84542 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 84603 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 84664 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 84725 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 84786 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 84847 29 96.6 39 ............................N NNNNNNNNNAAAACATTTTCCGAGCTTTGCGATTTATAT 84915 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 84976 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 85037 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 85098 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ======================================= ================== 20 29 98.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 103205-104048 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQEZ01000239.1 Escherichia coli strain NOR5_2 NODE_1995_length_230070_cov_41.786144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 103205 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 103266 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 103327 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 103388 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 103449 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 103510 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 103571 29 100.0 40 ............................. NNNNNNNNNNGCGAGGGAGATCAGAGATCAGGCTATTACA 103640 29 96.6 40 ............................N NNNNNNNNNATCTATTGTGAATTTGAAATGGTCCAGCACT 103709 29 100.0 39 ............................. NNNNNNNNNNATCTGGACACTGCATATACCGCAATCCGT 103777 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 103837 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 103898 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 103959 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 104020 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ======================================== ================== 14 29 99.3 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //