Array 1 347986-348416 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS562848.1 [Clostridium] spiroforme DSM 1552 Scfld_02_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 347986 36 100.0 30 .................................... CAGAATGGAAAAAAATATGTATATCCTATT 348052 36 100.0 30 .................................... ATTACCGTATACCCTAGCATCATCGCATAC 348118 36 100.0 30 .................................... TTGAAACTGATAAATGTGATGGGTGCGTAT 348184 36 100.0 30 .................................... GAAATTCATCACTAAATATATCTAATTTAG 348250 36 100.0 30 .................................... TACCACCGGTTGGACTTTGTTTAACTAACT 348316 36 94.4 30 ...............................A...T GAACATAAGGTTTGTCCATTTTGTCCGCCA 348382 35 83.3 0 .......................A.A.A.G..-..T | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.8 30 GTTTTGTTACCATATGGATTTTTGCTAGAATGAGAC # Left flank : CATCTAAATTTATCACATATACACCCAAACAATTTTTAAAAATACTCTCACCTATGTTTTGTTATGAAGAAGAGCAAGCAAATGAACATGATTTATCATATAATGAATTAATTATTTTTCAATTAAAAATGATTAATTATATTGCTAAAAAGCAGCAAAAAATAGTTGTTTGTCTTGTAGAAATACCTGAATTAACAATAGAAATAAATGAAATTTTAAAAAATATGAATAATTGCATAGTTATTGTTTTACTTTGTAAATACAACTTAGAATTGAATCTAAAAGATATAATTTTGTTTGATAACATAGTCTTAGATTTAAATGATGAAGAACAGCTTTATAACTATTTTATTGACAAAGGAATATACACGGTACAGGAGGCTAAAGATAAAATGAAAAAAATTATTGATAATGGAATTACTAAAATTGATATGTCTATACTAAAAGACTAAAATTTTATGATTTATTAGTTTTCAAATATATGCTATTATGTATTTGAG # Right flank : TGATCATAGATTATATATTTTTATTATAAAACGGAAAATAAATAAGACAGGATCAATACTAATCTATTGATTCTGTCTTTTTAGATGATAATCTTTAATTTTATTCTTCCATAATAAACATTTTATATATTGCTCTAATTGCATTATTAAAATGAATATTTTTAACACCAACAATAATATTTAATTCTGAAGAACCTTGATCAATCATTTTTATATTAATATTTTCACGTGCTAAAGCTGTAAATATTTTAGCAGCAGTGCCACGACCATCTTTCATTCCTCGACCCACGATTGCAATTAAAGCTAAATCTGATTCTAACTCAATTGAATCTGGTTGAACAGCACGATGGATACCAGATAAAATTTCTTGTTCTTTTTTGATAAAAGATTGTGTTTCAACAATGATTGTCATTGTATCAATTCCTGAAGGAGTATGTTCATAGGAAATATTATTATTTTCTAAAACTTGTAAGACTTTACGACCAAAGCCAATTTCACTA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATATGGATTTTTGCTAGAATGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTGTTACCATATGATTTTTTGCTAGAATAAGAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 34615-33200 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS562851.1 [Clostridium] spiroforme DSM 1552 Scfld_02_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 34614 33 100.0 35 ................................. AAGGCATAAGCCTAATCCCTAAAGGGCTAGATTAC 34546 33 100.0 35 ................................. AAAACTTTGTTTTAATTAAATTAAACTAAAAGTTA 34478 33 100.0 35 ................................. AAGAACCGTTGCACTAACTGTACAATAGCTAATAC 34410 33 100.0 35 ................................. ATTTATAAAAGTATGATTGATGAATGGAAAGAATT 34342 33 100.0 36 ................................. ACAAAAAGAAAAACAAAACGCGGTATTTTAAGATTT 34273 33 100.0 37 ................................. AATGGAAAAGATTATATATTGTTCTACTTGAAGGTTA 34203 33 100.0 36 ................................. CAGGATTTAGGATTTAAATATATTCCTAGTGAACAA 34134 33 100.0 36 ................................. TCCTGAAGAGATTTAACACGATTTAGCAAAGGATGT 34065 33 100.0 37 ................................. CAACTAGCATGATATCTGTTACATAATTTGCCCAATT 33995 33 100.0 36 ................................. AAATCAATATTTAGGCGCACTTTACTACGTAAAGCT 33926 33 100.0 36 ................................. ATACCACTTTGCTTTACAAAACGTAAATCATCAAGT 33857 33 100.0 35 ................................. AATATCATTGTTATTGAAAATATCACTAACGCCTA 33789 33 100.0 36 ................................. CCCTCTGTTACTTCTTTCCATCCTTGTGGATACGTT 33720 33 100.0 35 ................................. ATTGAACCTGTGTCGCTACCTACTGCACCGATTGA 33652 33 100.0 36 ................................. ACACATGGGACAATTGCATAATCATTGTATTCAGAA 33583 33 100.0 36 ................................. ATTATTTACACCAAAATTATTAATTATGATGATATT 33514 33 100.0 37 ................................. TATGATACCAAAACTAACACTGTCATTGATGCAGAAA 33444 33 97.0 36 .........T....................... AGCAGAGTTACTGCCCATAAAGGTATGCTTTCTAAA 33375 33 100.0 38 ................................. TTCTTTATGGTGGCGTTCTTGCAGATAGTATGTTTCGC 33304 33 93.9 28 ...........A...............A..... TGGTGGTCTAACTCCTAAACCTAAAAAG C,G,C,AATC [33267,33269,33272,33288] Deletion [33244] 33236 33 84.8 0 ...........A.................GTTA | AATC [33216] ========== ====== ====== ====== ================================= ====================================== ================== 21 33 98.8 36 GTTTATAATCTGATCATTATATGAAATGTAAAT # Left flank : TCCTCATGAGATATTACATGCTATTTGTTTTAAAGAGAATGTATATTTATACACAAATTTAGCACAAGGAATGTTATTTGTAACTGGTGTTGAGTCGATGAGTAAATCAAGGTATGTTTTTATGTCGTTATTACCAAATATTGTTTTTGGTTTGGTTCCTTATATTATTGGATTAATATTTCCAAATTTGATTTTCTTTGTTGTATTTGGAATCATTTCAATTAGTATGGGAGCAGGAGATTATTATAATACATATAATGCTATAACTCAGATGCCAAAAGGAGCAAAAACATATTTGTATCAATTTAATTCTTATTGGTATATACCATAATTTAAACAAATCTTCAGTCGATCTTAATTATGTAAAAATATATGGAGTACGACAGAATAAATTTAGCAAATAAACAAAATAAATATTGTATTTATACAATTAATATGATAATTTAAAGATATAGAGATAATTTAAAATAATTATTTATTTAATCAATACCTGTTAACGG # Right flank : GACTAAATTGGATATTATAGGAGAATTATTATAATTTAGTAAAAGTGGGATAATCTAAAATAGTAAGAAATAGAAGAATTTATAGTACTAAATTAAAAACTTGTAGAGTTGTAGTAAACCTAGTGCTGAGTTAGTTTGTGAATATGAATTAATTCTTTTTACTTTATTTTCATAGATTAATAAATATGATCTTAACTAATTCATTAAATATTGAAAAAAATTATAGTAATGCTCAAAAAGAACTTAATATTATTTAAAAATAAAGGGCGCTATAAAATTTCATGGGGATTTGAAACAAAAAATTTCAATTTCTCCCTTTAAAATATTATGGGGAGAATGTAGTATTTTTTCTTAATCAAATTCATCTGTTTCTTCATCAAATGATGTTTCTAGATCATCTGATTTCATTTTTATTGAATCATTATATTCTATATTCAAATCATATTTTTCATATTTGTTTTGAGAGTACAGTATTCTATTTCGTGTACATTCAAAGTTCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAATCTGATCATTATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 47073-45313 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS562851.1 [Clostridium] spiroforme DSM 1552 Scfld_02_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 47072 33 100.0 36 ................................. TTTTGATTGATGTTATTAACAAACATACCTTTGGCA 47003 33 100.0 36 ................................. CTGCACAGCGTGCAGTTAAAGATTTGCAAAGTGCAG 46934 33 100.0 34 ................................. AAAGGATTACAAAAATATATCGTATGGGCAGAAG 46867 33 100.0 36 ................................. TGAAGAAACTATCACATACGTAGAGACTGATGTTAG 46798 33 100.0 35 ................................. ACCCTTTGACGTGTGGCTCATTCAGCTCATCTAGC 46730 33 100.0 36 ................................. ATCAAAGATAAACGGCAATTGGAAGAGTTTATGTTC 46661 33 100.0 37 ................................. TTGGAATAATATTCAGCAACACCCTTAAATTGATTAA 46591 33 100.0 36 ................................. TTACTTTGAATTACAAACACTAATGCTCCTGTAGTG 46522 33 100.0 35 ................................. TGGTAAGCTACTACTTGCTCTATCCTGCCTTGTTT 46454 33 100.0 37 ................................. AATACAAGCCTTGTTTCATGATCGATAAGACAACGAA 46384 33 100.0 36 ................................. ATCATCAACAAAAAAACCAATTTCATTTGCACTGTC 46315 33 100.0 39 ................................. CGTAAAGGCGTTCCGTCTCTTTTTTCACCCTGCTGGTGA 46243 33 100.0 36 ................................. TCTTTTTACAAAGTTTTTTATATCATCATCAGGAAT 46174 33 100.0 36 ................................. TCTTCAGCAAGTTCAACATCATCATCTAATTCTAAC 46105 33 100.0 37 ................................. TTTATAATAAGTTACTGTTTTATCAACATATGTCATT 46035 33 100.0 36 ................................. GTGGTTTTTTAGCAGTTGGATCAGCTGGATGGTTTG 45966 33 100.0 36 ................................. GTAAATATCTTCAATGTTAGCTAAACTAAGGTCGCT 45897 33 100.0 37 ................................. TTTTTTTGATAAGATGTATGCTGAAGAATTTCCGGAC 45827 33 100.0 36 ................................. CATACTTATGGCGATATGTTTAATCTTGTAAAAAAA 45758 33 100.0 36 ................................. TATAATCTAGAATAGAGCCATTTAAATCATCATTAC 45689 33 97.0 35 ...........................A..... ATTTGTCAAAAAGGTCGCTCAGAATTAAAATTTGC 45621 33 100.0 37 ................................. GTGCTTTATTAAGTGATGCAGATAAAAATTTCGAATA 45551 33 97.0 36 ...........A..................... GTCAGTCAGACCAATTTATAACAAGAAGTAAATTGG 45482 33 100.0 35 ................................. ATTTCATAATCTCCAACATCGTTCCATCCATCTTT 45414 33 100.0 36 ................................. CTTTTATCTGTTGATCTACTTTGTAGGGAACAGTAA 45345 33 78.8 0 .........T..A.....C.......C..T.TA | ========== ====== ====== ====== ================================= ======================================= ================== 26 33 99.0 36 GTTTATAATCTGTTCATTATATGAAATGTAAAT # Left flank : TTAATTAAACATATTATTGATGAAAAAATATACGAAGGGTTTAAAATATGGTGGTAATATGTATTTGATTGTTATATATGATATAAAACAAGAAGAAAATTATACTAAAAGGCAACGTTATGTTTTTAAAACATGTAAAAAATATTTGACACATATACAAAATTCTGTATTTGAAGGAGAACTTGATCGAGCTCAATATTTATCATTAAGTTCAGAATTAAAAAAATATTTGATAGAAGATATAGATTCATGTATTATATTTTCAGCTAGGAATAATGTATGGATGAAAAAAGATTTTATTACTAGAAAATTAGAAGGAAATGATCAATTTATTTAAAAGTCTTCAGTCGATCTTGATTATGCAAAAACACGAGGAGTACGACAGAGTAAATTTAGCAAATAAACAAAATAAACATTGTATTTATACAATTGATATGATAATTTAAAGATATAGAGATAATTTAAGATAATTATTTATGTAATTTAATGCCTGATAACGG # Right flank : AAAGATATTTCTTGTTTTAGGCCTTAGTGGTTGTAGTAACAACTCACAAGATGAATCATCCAATTCATCAACAAATGAAAATAACACACACAATACAGACACAACTACTATTGATGGTAAGATATTAGTTGTTTATTATTCGGCAACTGGAAACATTGAAGATGCAAGAAATATTGAACTTGTTTCAACAACAGTAGAAAATTGGGATGAGTATGATCGGGGGTTTATTGGTTATCCACTATGGTGGCAATACTGCTTAGCAAGTAAATAGTTTTGTTGAAAACAATGATTTTATTGGAAAAACTGTGATTCCATTTTGTACTTCTTCAAGTGATGGAATTGGTGAAAGTGGTCAATTGTTAGCTGGTATGGCAGGAACTGGTAATTGGCTAGAAGATAGAAGATTTTCATCAAATGTATCTCAAGATGATATTCAAGAATGGATTTCAAGTTTAAATTAAAGAAGGTGTTAATGATAAAGATATCAATATATTTATTGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAATCTGTTCATTATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //