Array 1 149219-148661 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQEZ01000005.1 Neisseria polysaccharea strain M38962 M38962_S4_cleaned_ctg_1002, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	================================	======================================	==================
    149218	    32	 100.0	    38	................................	AGACTCGTGTTCGAATGCGACATCGCACCCGACCAATG	
    149148	    32	 100.0	    33	................................	AGACTAGCGTCTTGTTCGGGAAGACTATCCAAG     	
    149083	    32	  96.9	    33	T...............................	CAGTACTCTCCAGTTGTCGTAAAGTGCAGCCCA     	
    149018	    32	  96.9	    33	C...............................	GGTTCGTTGAGGGGGAAATAAATGCCATTGCTC     	
    148953	    32	 100.0	    34	................................	TTGAGTCTCGCTTTTTACTTTGTTTTTAAAGAAC    	
    148887	    32	  96.9	    32	A...............................	TTGGTATAAATGCGTAACGTCGTTGGATAATC      	
    148823	    32	  96.9	    33	C...............................	AAGGCAGAAATTGATTTTGATTTCGTCACCAAC     	
    148758	    32	  93.8	    34	T..............T................	CTACAAAACGGCAATCACGCGCCGCTACATCCAA    	
    148692	    32	  90.6	     0	T.....................A.A.......	|                                     	
==========	======	======	======	================================	======================================	==================
         9	    32	  96.9	    34	GCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	                                      	       

# Left flank :   GCATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGATTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGTGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGC
# Right flank :  GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATGTCTTTGTTAAAAACGGGTTGATATTATCTGTACATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATAGTAGAGATGTGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGTGGCGGCAATTTCGGCGTACAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCTCCTGCCAAACCCTCTATAGAAACCACGCCGGTCAATCAACCCGCCGTCGGTGCGGCAATGCGGCTGCCAAGGCGGAATATTGCTTCCTATAAACAAGACGGTACGGAAATTCCCGACAA

# Questionable array : NO	 Score: 5.70
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.00,-3.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.74,4.91   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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