Array 1 19762-20655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKFZ010000022.1 Streptococcus equi subsp. ruminatorum strain FJ1804 contig_22_len_38713, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19762 36 100.0 30 .................................... GATTTTTGGGTGTGTTGTTCTCCGTTTTAT 19828 36 100.0 30 .................................... CGATAATGTTAGAAGATTTTCTCTCATTAA 19894 36 100.0 30 .................................... GATTTTTGGGTGTGTTGTTCTCCGTTTTAT 19960 36 100.0 30 .................................... CATCTCGACAGAGATTGTCGAGACAGCAGA 20026 36 100.0 30 .................................... TATTATATCTGCTTTCGCATTAGCGAATTA 20092 36 100.0 30 .................................... TCGTATCAATGCTGAGATTATAGGCACAGA 20158 36 100.0 30 .................................... AAAGTTTGTTTCATTACCTTTATATAATAT 20224 36 100.0 30 .................................... TATTATATCTGCTTTCGCATTAGCGAATTA 20290 36 100.0 30 .................................... ATATGTATCGAGTCGTATGGACTCGGGATA 20356 36 100.0 30 .................................... TGCTATTACACTGACGCAGCCGCATAACAA 20422 36 100.0 30 .................................... CGATAATGTTAGAAGATTTTCTCTCATTAA 20488 36 100.0 30 .................................... GATGAGATGGCAGAATTTGCGGACATTTTA 20554 36 100.0 30 .................................... TTTACAGTTGGACACCTCGAGTTGGCGCAG 20620 36 83.3 0 ..................T......A...TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.8 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTTTGTATGACTTCCCACAATACATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAGTTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGTAAAAGATGGTCTACGAG # Right flank : TCCGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCCAATGATGAGTAATACTGCGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTACCCACCAGAGGAGATTCATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTCCTACCCTACTATTGGCAGAAAAGTACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAGACGATTGTCAATCTTTTGGCAATAGCTCGTTTGCTGTTACACCCAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTAGCCATTTTCTATCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGTTCAGCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 11719-12012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKFZ010000002.1 Streptococcus equi subsp. ruminatorum strain FJ1804 contig_2_len_156726, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 11719 32 100.0 33 ................................ ATTCCCGGCGGCTTTAGGTAGGTAAATAGAGGG 11784 32 100.0 33 ................................ CCTGGTGCTAATCGTGTCCCACGCCCGACCATC 11849 32 100.0 34 ................................ GTTTAAAATATCAGCAACTGCCTCGACTGTCACC 11915 32 96.9 34 .....................T.......... TTCGCTGTCATCTCTTGTCAAAAAAGCTATTAAA 11981 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 5 32 99.4 34 GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT # Left flank : AAGGCTATTCGAGGGGATATTGATAGTTACCCACCTTTTATGATTTAGGAGATTGGTTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCAGCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATATGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCTTACTTCTGTAAAAGGAGCGAGTGCGAGCCTGGATTACTCATAAAATGCTGGGAGGCTCGCGCTAAAATAAGCTAAAAAATGGAGAAATGAGGGGTTATAGCTGAATATGTTAGTAGCCAGCCTATATCATTTCTCTATAAACTGTGCTATATTGCGCA # Right flank : TTGTATATTCCATTTTATTTCCCCCACTTACGTTTGTCTCGCCCTTCGCGGGGGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGGTAAATCATATTGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTATTGCAACAGGATTGGTTTTTTCTTGTGATTGCATATCAGACTTTTCAAAAGAACAAGCACATCATCTCAGTTGGGCTGGTGCTTGATAGCTCCTGAGCTCTTATTTACTATAGCTGGTAGGATGTTGCTGATGGCCTAGTAAAGCATATCGTATCAAATTCAAGTTTTTTCATGTCATTGTCTATAGTTTGTCCGCCCTACTTTGGGTAGAATGGAGATAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTTTATT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //