Array 1 441568-442573 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDDT01000001.1 Klebsiella oxytoca strain SN1015-66 NODE_1_length_647477_cov_20.3217_ID_6712, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 441568 29 100.0 32 ............................. ATAATAAATGCCCGGCAGCGGGTCGCCGTTGC 441629 29 100.0 32 ............................. CCTCATGTGTCGGGTACAGCTCGCCGATGCGG 441690 29 100.0 32 ............................. GTTATGGCCGGTACCGACGAACAGCAAACCGT 441751 29 100.0 32 ............................. CGTATAGACGTACAGCAGCGCAGCCAGCGCGA 441812 29 100.0 32 ............................. TCTGGGACAACCTCGGCATCTGGTGCTGGCTC 441873 29 100.0 32 ............................. CTTGGCGATCCTGTTCGTGAGGTATTCGGAAG 441934 29 100.0 32 ............................. ATTGACCAGGCTTCCGCTGACCGACTGTTGAA 441995 29 100.0 32 ............................. GCACTGACACACGAGGAGCTTTGCCAGTTAGC 442056 29 100.0 32 ............................. ACTCCCTTCTTGCCTGCTTCCACTGCTCTGAT 442117 29 100.0 32 ............................. AACGGGCGCAGATATCCATAGGTCCACGTAGC 442178 29 96.6 32 .........A................... TTACTGGAGATCTGATGCACTTGCGTTCAAAT 442239 29 100.0 32 ............................. AAGATCAACCCGCGGATGAACACATTGATGCC 442300 29 100.0 33 ............................. GCCAGTGAACAGCCTGGCGCTGTGGCTGAATAA 442362 29 100.0 32 ............................. CCGGTACCGCGCACGTCAAATACTGAAGATGG 442423 29 100.0 32 ............................. CCTATGAAGTCAGCAACCTCGGACGGGTCCGC 442484 29 100.0 32 ............................. GCGGTGAACTCAGTTGCAAGTGGGCAGGGTGA 442545 29 93.1 0 .............T..............A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGATATCGCGGTGTTCTCAAAGGGCAATATTCAGCGCCTGGTCGGCGCGCTGGCGGAGAGCCATCGCCTCACGCTGCAAACGCGTTATCAGGTTGACTATATTGAAACGCTTTACGGCCTGGTGCGTTCCCGGCTGGCGGTGGCGATTCTGCCTGAGCTTTATACCACTCACCTTCAGGATCCGGCGTTAAAGGTGGCGCAACTTCAGCAGCCGGCGCTGACGCGAACCGTGGCGCTGATGCGCGGGCCGCAGCCTCTGCCGCCGCTGATAGAAGCGTGTTTTACATTATTACTGAGTTCGCTGCGGGAAGTGAATCTGTAGAGGCCGTTGCTCTCTCAGCTTGTTGTGGTGAAATGCGAGAGAGGTAACGGAATAGTTTGTTGTGCCTTTTAAAATCAAATAGTTATGGCTCTTTAAAAACATCAATTTGTTGCAAAAATGTCGGTAGATTGTTCTTGGTGGATAAATTTATTATAAAACAATAAGATATGGTTAGT # Right flank : ACAGTCAATGTTTCCCGAACATGGTTCTAAAGAGTGTTCCCCCGCAGCTGGCCGCCGCGGGGGCTGATTTACGGCGTCACGATATTGAACCAGAACTCAAATTTATCCATATAGCCCAGCATCTCATCCAGCTTCGCGCCATCGCCGGTCACTTTCACTTCACCCTTATCTTGCGCCTGTTTTAGCGTTTCCTCTTTCAGGATGATTTTGTTCAGCGTGGCGCGTTCCAACGCAATGGTAGCATCCGCGTCCTTGGCTTCGGCATCGGCGGTGTGGTTGAGCACGCCGTTTTCCAGCTCCAGCTTATATTTACCGCCATCGTTACCCAGGTCGATATTGAACACCGCTTTGGCGGTTCCGGCTTTCTCACCATTAATATGCACCGCAAGGTAATCGAAGAACATTTCCGGGGTCATCGCCCGTACGGTATCCGGGCTGGCGGTGTTCGGCGTCGGGCCTTTCACTACGCCGTTGCGTAGCTCCTGAGCGCCGGTCAGGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 192926-190698 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDDT01000003.1 Klebsiella oxytoca strain SN1015-66 NODE_3_length_525162_cov_20.0685_ID_6716, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 192925 29 100.0 32 ............................. GTTATGGCCGGTACCGACGAACAGCAAACCGT 192864 29 100.0 32 ............................. TGATAATTATACGTCTAATGAGCCATAAACAG 192803 29 100.0 32 ............................. GTGCGCAATGCGATTCCATCCTCGACCATCTG 192742 29 100.0 32 ............................. GTACCTGGAGACAAAAACGCGGCGTCGCCCCG 192681 29 100.0 33 ............................. GCCGAAACGGGGTCGTTGTACGGTAGCTCCGAC 192619 29 100.0 32 ............................. TGACCGCTACCCTTTTTGAAATAGCGCACGGT 192558 29 100.0 32 ............................. CATGAGCTGGGCGAGCTGCCGGTGATCAACGT 192497 29 100.0 32 ............................. CCTTCACGTCGGCGCTCCCCTTCTGCATTACG 192436 29 100.0 32 ............................. GTGACACGGTCGCCAAAATCACCGGCGTTTAT 192375 29 100.0 32 ............................. TGAATTTTTCCTTTCCGAACGGCATCTGCGGT 192314 29 100.0 32 ............................. TCTGTTTGTCTAAGCACGATCGTCCCTCGCAT 192253 29 100.0 32 ............................. AAGGGGAAGAAGTCACCGCTGACGGTGCCGGT 192192 29 100.0 32 ............................. ATTACGCCGCGCGTTCAGCCGCATGGTTTTAT 192131 29 100.0 32 ............................. TTGACTCCTGCGCCAGGTCGGGGCGCTGCCGT 192070 29 100.0 32 ............................. TTACCGCAAACGCGGCGCATAGCTTGATCACG 192009 29 100.0 32 ............................. CCGATCAAAGTCAAAACCGGGATCGTGATGCC 191948 29 100.0 32 ............................. CATCGCCCCGAGCTTATCCCGGCATATCGTGA 191887 29 100.0 32 ............................. GCACTGAGGACAGAGGCGTGTAGTGTCAGAAT 191826 29 100.0 32 ............................. ACCATAGAACCAAAATCAACCTCAGGGTCAGC 191765 29 100.0 32 ............................. ACAACGCACCGCGGCAGAACAGCGAAAAGTTA 191704 29 100.0 32 ............................. ACCACGAATGAAAATGTGGCCAGGAAAGCCGA 191643 29 100.0 33 ............................. GTTGGCCAGGCATACGCAGCAAATGCCATTGCG 191581 29 100.0 32 ............................. ACTTGTTCAGAAAAAACCCCATTAGGAGGTTA 191520 29 100.0 32 ............................. GGTGCTTGCCTGGGTAAAACTGAACAGGCTTA 191459 29 100.0 32 ............................. ACCATTCTCATCATTCACGGCACGCAGTTAGT 191398 29 100.0 32 ............................. CCGTTGATTTTTTCCGACGCTGGCTCAGTCTC 191337 29 100.0 32 ............................. CGCTTCCGTTTCCTGAGCATATAGGTCGCCAT 191276 29 100.0 32 ............................. CGACCGCCAGCGGCGTTGTTAAACACGCCTGG 191215 29 100.0 32 ............................. GTGATTCCAGCGTTAACCCGCAACAGTTCATG 191154 29 100.0 32 ............................. CGTTGGATCGACGATGACTCCCCGTTAAAAAT 191093 29 100.0 32 ............................. TGAAAGAATTAACGCCGGGAGAAATGACGGCA 191032 29 100.0 32 ............................. GGTACTGCCCTGCACTGTCTGCTGCTGGAGCC 190971 29 100.0 32 ............................. ACAACGCAGCCAACTGAGATTCAGAAGGCAGC 190910 29 100.0 32 ............................. CGATCCACTTTCTCACCGCAGAGCAAAAAGAA 190849 29 100.0 32 ............................. CCTGCCGTTGACGTCAGACATCAGACACTAGC 190788 29 96.6 33 ............................A GCTCCCGCTGGACGCTTCGACATGTCTGCGAAT 190726 29 82.8 0 .....G......TC.......G.T..... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTAGCTGCTGGTGAGATTGAGCCGCCTAAGCCAGCGCCAGATATGTTGCCGCCGGCGATACCAGAGCCACAGCGACTCGGCGACGGCGGGCATCGGGGGCATGGCTGATGAGTATGGTAGTTGTTGTTACGGAAAACGTGCCGCCGCGCCTGCGAGGACGGCTTGCCATATGGTTGTTAGAGATTAGGGCTGGCGTCTACGTCGGCGATGTTTCAAAACGTGTGCGGGAGATGATTTGGCAACAGATTACGCAATTAGGCGGCGCTGGAAATGTTGTTATGGCCTGGGCGACGAATACAGAGTCCGGTTTTGAGTTTCAAACTTGGGGAGAAAATCGACGTAGTCCGGTAGATTTGGACGGCCTGAGATTGGTTTCTTTCCTTCCCATTGAAAATCAGTAAGTTATAAGTTCTTTAATAAAAAGGAATTGTAGAACATAAGTTGGTAAATTGTTGCTCTCTGAAAATTGTAATAGAAAACAAATATATATATTTAGA # Right flank : GTTTTTTCCCATACGCGCTCCGCATTCAGGGAATGTTCCCCGCGCCGCCATTCTTATTATCCTGTACTTTATTTTTTTACGTCATTATTTAGTGTGGCAAAGTCCAGTTCCAGTCAATACTTGCCAAAATTTTTGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACAGACGTTTTACCGATGCTGGGTTCTGAGCCCAAATCCAACCCGTCGTGCCAGACGCGCTGCCAGATATAAACCTGGTTGTCGGCGATGGACCGCGCGCTGGCAGCCAGTAGTAGAAACAACGGTATTAAAAAGCGAAAACGCATCATGGCGACAGTCCTTGTTGCCAGATTTTATCGTTAGTCTATTTTGAGGTGGGCTTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATCACATCGCGTCCGCGATGCTCAATCCGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAACTGAAGGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //