Array 1 3136690-3134947 **** Predicted by CRISPRDetect 2.4 *** >NC_007907.1 Desulfitobacterium hafniense Y51, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3136689 30 100.0 38 .............................. CTTGCTCACTGACGTCAACTACGTACACTGGCTCCCCA 3136621 30 100.0 39 .............................. ATATGGGAAGACCATGGAAAGATACAGGAAAATTGGCCT 3136552 30 100.0 36 .............................. AAAACCTTGGCAAAGAGGCAGTCATTAAAGGCAAGG 3136486 30 100.0 35 .............................. CCTTTATCGCCTCCATGACCTTTGCATGGGGCATG 3136421 30 100.0 37 .............................. CTTGAGTATAAGGAATTTGGGAAGAAATCAGTCGTAG 3136354 30 100.0 38 .............................. TACACTTAATGTTTATGCCTAACCTAGTCAATCCTCTT 3136286 30 100.0 35 .............................. AAATTTTTTTCTAGCATAATTATTCAACCTCTTTC 3136221 30 100.0 35 .............................. TTAAGTTTTTCAAGTGATTTAATTGCTCTTTCTTT 3136156 30 100.0 35 .............................. TCTACTTCAACCTCAAATAAATGACTAGCCTCTTT 3136091 30 100.0 35 .............................. TGTAATGTGGTCATAATAATCATGGCCTTGTATCC 3136026 30 100.0 35 .............................. TGAGGAGGGAGTACGGAAGTTGGAGTACATACTAA 3135961 30 100.0 35 .............................. CTCCACTAGTAAAATTAACTTCTCTGCTATCAATA 3135896 30 100.0 35 .............................. CTTCTTGTCTCAGGCAGGGATCACGGAGATGAAGC 3135831 30 100.0 36 .............................. TAAGGAAGGCCGCAGTTAAGGCTACAACCACAGTAA 3135765 30 100.0 36 .............................. TGTTTTTTACCTTAATTTCTCCAGTCTCATCATTTA 3135699 30 100.0 36 .............................. CTTTCATATCAAATTCTCCTTTCATCAACTATTCAT 3135633 30 100.0 36 .............................. ATTTTAGTCATCTCAATTCCTTCTTTCTTTTTAAAA 3135567 30 100.0 36 .............................. TGTTCTATCCTGACTAAATCACTCGGATATAAGCAG 3135501 30 100.0 35 .............................. TATAAATTCCATCCCTTTCAATATCAATCTCTCTA 3135436 30 100.0 36 .............................. TCAGGGAATGTATCTCAGGAAGACATAACAAATCTA 3135370 30 100.0 34 .............................. CTGCTGAAAAAGACGGGCAAGGATTGGGGCGCAG 3135306 30 96.7 36 .................G............ ATCTCTGATAATGCGGTTAAGTTATTCGTCTCCCTC 3135240 30 96.7 35 .................G............ GTCAATGCGCTGCCTAATGGAGCGACGAAGACGGA 3135175 30 96.7 35 .................G............ AGCGTTAGCTCACTAAGACCCTCAAGGCGTTTTCC 3135110 30 96.7 36 .................G............ ATGCGACTCCAGTCTCCGTCTCAGCCCTAGAAGATA 3135044 30 93.3 38 ........T........G............ AATACATTAAGCTTTTCCGACAAATCGGAACGGTCTAG 3134976 30 90.0 0 .......A.........G...A........ | ========== ====== ====== ====== ============================== ======================================= ================== 27 30 98.9 36 GTTGTTAGCTTACCTATAAGGGATTGAAAC # Left flank : GAGAACACTATCGAATAGACGGTATGCAGCGACTTTTGAAAGGGATAGGCATAAATTTGGGGGAGAGAAAATCCGGAAGATGAGGTATAATTATGTTTGTGATCTTAGTCTATGATATGGGGGAAAAGCGGGTAGCCAAAGCACTGAAGCGGTGCAGAAAGTACCTGAACTGGGTGCAGAATTCTGTCTTTGAGGGAGAGATTTCGGAAAGCAATCTGGCAAAGCTGAAGATGGAGCTGGACAGGATTATAGTGCCGGAAGAAGATTCGGTTATTATTTATACACTGAGGACGACCCGATATTCTGAGCGGGAGATCATGGGCTTGCGAAAAGGAGGCCAGAATTTAATCATATGAAATTGTCGTCGATGTACAGTAAGGTAAAAATCCCTGGAGATCGACGACAAGGGATGTCGCTTAGTAAGCGGTCTGCTGAGAAAGGTGGAATTTTTGAGATGGCTTTGGGGAGCTGTAGATGTTGATTTTATGCGGGAAAAATGG # Right flank : TGCCGATTGAGGATTCCCGGGAGTCTTTCACCGCGGGTGTTTGACCTACCTTAATTCGGTTTACTAGCGGGCCGTGAAACGGGCTGCTGACAACGCAACAGGCTGTATGCTCCCATAAGAGGGAGTATACAGCCTGTTTGTTGTGGGGGATGGGTGTGAGAGCCATGCCCGCCAGAATCCCTGTAAGGAGAACGAGCAGAAAGCGAGCGGAGAGCTGGACGATGATGTCGCGGCTTGTAAATCCATAGGGTCATGAGCAGTGCCCCAAGGAATCCTCTGGCAGAGACGCTTCCGGGCGATCGTCTGGGCGACATAACCGTCGATATCGGCAATCTTGGCAAAGGGAAACTGTCCGGTGTAGTCTCTTACCTTGTCACGAATAGAACTATTGGGAGTTATTGGAGGAGGAAAAAAGACAGTTGTTCGCACAATGCTGACTCGGGAATCGGAACATTGATCTTGACCTTGCCCCTGCTCCCTGCTTTCATTCTTACTCTTTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 3143688-3142336 **** Predicted by CRISPRDetect 2.4 *** >NC_007907.1 Desulfitobacterium hafniense Y51, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3143687 30 100.0 36 .............................. CTCATTACTATCTACTCCTTACCAAATCTCCATTCC 3143621 30 100.0 40 .............................. AGATAGTAGGTGTCAGTGGCGAAAAGAAGCTTTTCTCCGG 3143551 30 100.0 35 .............................. AATAAATACTCCGACATTTTTTACTCATCATAACA 3143486 30 100.0 35 .............................. GTTGAAGTAGGCGCCTTGCTTGATGTCGTGGATGT 3143421 30 100.0 33 .............................. GCAACTGCCAGTTCCTGCAACACTGCATTGTCG 3143358 30 100.0 36 .............................. TTTTCATTCCAACACAACTCCCCTATTCTCCCGCAT 3143292 30 100.0 39 .............................. AATGCAAATTCTTCCTTGTGCAAATCAATGCACCTCCTA 3143223 30 100.0 37 .............................. TCAATAAACACCATCAACATCGGCAAAGCCCTCCTTA 3143156 30 100.0 35 .............................. AGGAAATACTTAATCAACCTGAGCAAAAGGAATTC 3143091 30 100.0 37 .............................. GGCGAAATGATAACGACATGGGAACTTCCCGCAATTG 3143024 30 100.0 36 .............................. ATGCAGGGGTGGCTAAAATGAGTGCGGAAGCCCTGA 3142958 30 100.0 37 .............................. CTCCGTAATCGACGATAACCAGAATGGGACCATATCA 3142891 30 100.0 35 .............................. ATTTATCACCTCCTAAGTACAGTGCAGCAAATTTC 3142826 30 100.0 36 .............................. TATACCAAGGCAGTAAATACCCATTGGCATCGATCA 3142760 30 100.0 36 .............................. ATTTTGTAATCGGAGTGTTTACGGGTGATTGGGAAA 3142694 30 100.0 38 .............................. ATTGACCCCAGAAACGCCGTATGGCCTGCCCGGGTATA 3142626 30 100.0 36 .............................. CTCGAAACTACTGTTCTACTGGCCGATGAACAGATC 3142560 30 100.0 34 .............................. CCCAAACCTACGCCGAAGCCCTCCGCGAACTATC 3142496 30 96.7 35 ....................A......... ATGATTCGAGTAATTTTACATTAGCCTGCAATTCA 3142431 30 93.3 36 ........T............A........ TAAAAAATGTGACCCTCTTCTTGTAATCGCCCTAAT 3142365 30 90.0 0 .................A...A.......T | ========== ====== ====== ====== ============================== ======================================== ================== 21 30 99.0 36 GTTGTTAGCTTACCTATGAGGGATTGAAAC # Left flank : CTGCATGGGATAAATTTAGCCTTGATGAAAAGGCTTTGAAATTTTCAAAGTATATGGCGGAGCTCTGGAAGATACATTGCTTTCGAGAAGGGAATACAAGAACTGTAGTGACCTTCTGCTGTCAATTTGCAGAAAGCAGGGGATTCAGCGTAGATAGAACATTATTTCAAAAACATAGCGCTTATGTAAGAACGTCATTAGTGGCAGCATCAGCCTACTTTTCGGATCTAGGAGATAGAGCGCAGCCTGAATACCTGATTAGAATTGTTAGGGACAGTATCGAAAGAGGACGAAGGAAAGCCTAGCAGAGAAACGTTTAATTATAAGACAAGAAAGAGCATAAGCGTTACATTGAAGTTGTCGTCGATGTGCAGTAAGGTAAAAATCCCCGGGGATCGACGACAAAGAATGGGGCTTGGTAAGCGGACTAAAAAGAAAATGGCTGATTTGGTTAATCTTGATCAATGGCTGTAATGGCTTATTTAATGCGGGCGAAATGG # Right flank : ATGAACTTGGTAGGGCTTTGTTTGATGTTCGTTATCTTGAAAAAAGTTTCAAGACCCTTGATAATTCCCTTAAGGCCTGTGAGCAGAGTTTAAAGAATATATGTAATACATTTCGCTGGCTGCAGCTCCTGGCATTGTATTACATATATCCTTGTGGTAACATAAAAATTAGGAGGGATAAGGCATGGATGATAAATTAGATTTGATTTTAGACAGATTAACGGCAATGGATAGAGGCTTAAAAGCTGAGATAAGTTCTTTAAAATCTGAGATAGGTTCTTTAAAACCCGAAATAGGTTCTTTAAAATCTGAAACTCAGGCGATTAGTAAAAAGGTGGATATGACATGGAGAGCCATTCAGGAATTAAGGGATGATAAAACTGAGTTGAACGAACTTCGTAAGAGAATAGAAATTTTAGAATCAAAATTAGCAATGTAATACATACCCAGATGGCAGCTCCGCGGTCGGCTTTGCCCGGGGATGGAGGCGAAACATCGGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 3146140-3145313 **** Predicted by CRISPRDetect 2.4 *** >NC_007907.1 Desulfitobacterium hafniense Y51, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3146139 30 100.0 34 .............................. TTCTTGATCCACCATGCGGCCGATTCCTGGGCCG 3146075 30 100.0 38 .............................. CGATGCACATCTATTCCACCGGATACCCCGACATTATC 3146007 30 100.0 35 .............................. AAAGAACAAATTGATAATGCGCGTGAAGAATTCAA 3145942 30 100.0 36 .............................. TAGTCATACCAATCAACATGAAGATCGTAGGCCAGC 3145876 30 100.0 36 .............................. CGATATGCTTCAACATAACCATCAGCACCGGGATAA 3145810 30 100.0 37 .............................. AGTGTAACTATTGTCCCGATATTCTAAAAACCAATAT 3145743 30 100.0 35 .............................. GCACATCTTTGACGCCCCCCAATCTCCCTGCTAAA 3145678 30 100.0 36 .............................. GGGATTTAGAGCGCGCTATAAAGCAGCATGCCCAAA 3145612 30 100.0 36 .............................. CCGTCTTTAACCAATACAACCCAGATCTGCGCCAAT 3145546 30 100.0 39 .............................. AGCAAAAGGATTATGGGGAAGCGTTTGATATAGGACGAA 3145477 30 100.0 38 .............................. AGCTGAAAAAATATGTTTCCTACGCAGCCAAAAAGGAA 3145409 30 100.0 36 .............................. AGGAATGCCAACAAGCACCATGCCGGGGGAACCTGG 3145343 30 80.0 0 .G...............A...A.A..G.G. | C [3145319] ========== ====== ====== ====== ============================== ======================================= ================== 13 30 98.5 36 GTTGTTAGCTTACCTATGAGGGATTGAAAC # Left flank : TGACTAAGCCGATACTCTATAGGGTCTACCCGGAAGTATCCTATCCTGTGGCGGAGGGAAAGGAAATTGAGATGAGGACAGTTGTACCTACGGCTCTTATCCGGGAGATCGTTCTCAAGGCGGATCGCTACTATTGCCGGGCAGGTGGGTATTTGTATGAGTATAAAGGGCAGCGGACCTTTGAGAAATCAGTGGATTTCCTTTATGAGAAAGACGGGAAGCCTATTGCGTTTATCCCTAAAAGCGATGGCCCGGATTCGCCTTTGGATCTCAGAGTGGCGCAGTTCGGAGAGGATTTGGTATGTCTTGTTTAATGGCCTTGGCTTAATGGGCGGAGATTATTTTGCTATATGAAATTGTCGTCGGTGTGCAGTAAGGTAAAAATGCCTGGAGACCGACGGCAAGGACTATGGCTTAACAAGCAGCTTGTGGGGGAAAACGCAGATTCTCCGGGCTGAACTTGTTAAGCCATAAATGCTGATTTTATGCGGGTAAAATGG # Right flank : ACAGAAATTACAAAAATAATATCACCGTAGCTTAGTGTAATGTAAAAAATATGTGTAATACATTTCGTCGGCTGCAGCTTCTGGGATTGTATTACAAATATCGTTATGGTAACATAAAATTCAGGAGGGATAAGGCATGGACAAGTTAGATATTATTTTGCAAAGGTTGGATAGTCTCGATCGTATTGAAGCTGAGATTAAGGCGTTAAAAGCTGATCATCGAGAAACATATAAAAAACTTAGTAAGATTGATGAAATTTCCGTTATGCAAGGATTAACATGGAGAGCTATTCAGGAATTAAGGGATGATAAAACTGAGTTGAACGAACTCCGCAAGAGAATAGAAATTTTAGAATCAAAATTAGCAATGTAATACATACCCGGTCCGCATCTCCGCGGCCGGCTTTTCTTTTTGTATTATAAAATTTCTGGAGCGGGGTTGTTAGCTTACCTATGAGTTGAAATTTTGCGACCTATTCAGCAAGCCCTAATTACAACGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 4 3154432-3151349 **** Predicted by CRISPRDetect 2.4 *** >NC_007907.1 Desulfitobacterium hafniense Y51, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3154431 30 96.7 36 .....................G........ TCTTCCATTTTCATTCTTTGCTAGTAAACAAATATG 3154365 30 96.7 37 .....................G........ ACGATAAGGTCTATATAGGTCAAACAATTCTATCTGT 3154298 30 96.7 36 .....................G........ CAATGTTTTTTCCGATGGAATATACATGGGATATAA 3154232 30 96.7 35 .....................G........ ATCTTGATAATCAGAATGATCTAGAACTGTACAAT 3154167 30 96.7 37 .....................G........ AATTAATAAGAGTTTTATTAGAAAAGAGAGTGTAATA 3154100 30 96.7 36 .....................G........ AAATCTCAAGGATGGAAAATTCTTCGTATCAGAAGT 3154034 30 96.7 36 .....................G........ AAAAATAATACAGAAAAATATATCCATTGTAATAAT 3153968 30 96.7 38 .....................G........ AGTGGAATGGAATGTCCAAGTAGTACGGCTTTCTATAG 3153900 30 96.7 36 .....................G........ TTGGGGACAAACTGGGGACAACACCTATCTCAGACC 3153834 30 96.7 37 .....................G........ TCCGAAACCTAGACATCCTGAAAGGGCTGGGTGAATG 3153767 30 96.7 36 .....................G........ CTCACACCAAGCCCGGTCTTTTCTTCGGTAAGCCAC 3153701 30 96.7 37 .....................G........ CTTGCCAAGGTAACGCCTCCTTATGTAAATGCTTCGG 3153634 30 96.7 38 .....................G........ TACCAAGGGTTACACGTCATAACCTAAGTCAACCAAAG 3153566 30 96.7 36 .....................G........ TCAGGATCCTCTACTTCACTTTCGCTGTTAAGCTTG 3153500 30 100.0 37 .............................. CTATTTCTGCCCCTTATTATCTCCAATTGACCATCGC 3153433 30 100.0 36 .............................. TTCCGTGGACATAGATACATACCGCATACTGTTTTG 3153367 30 100.0 35 .............................. TCCAATTTAACAACACCTCAGCGAAGCAAGCAATT 3153302 30 100.0 36 .............................. AGCCACCATTTCTTCCCATTGAGATACCTGGGCAAT 3153236 30 100.0 36 .............................. TCTATCCTCAAGTGGCCGCTGCAGATGTGGCCAAAA 3153170 30 100.0 36 .............................. AGGTCACTACCCGGAAGTGATAAGGCAAGCCCCCAT 3153104 30 100.0 36 .............................. CCCATGGGAGAGATCCGCAAGTAGGGCGAATGCCTA 3153038 30 100.0 37 .............................. AACTCCGGATGGACTCCCATCCACGGGACCGCAGAGG 3152971 30 100.0 37 .............................. ATGTTAGATACCTCTGACACAGCGCCAACTGCTCCCC 3152904 30 100.0 36 .............................. CTATGAAAAGTCACCTTAAACGGCTCCTCGGCTGGA 3152838 30 100.0 36 .............................. ACATATAAGCTGTACATGGTCCTATCAATGGAGTCG 3152772 30 100.0 37 .............................. TATTAAAGAGGAGCTGAACAATATGACAGTACCGCAC 3152705 30 100.0 36 .............................. TGAGAACGGCTCGCTTCATTCTGTCCGTGCCGGTGT 3152639 30 100.0 35 .............................. TTCGAGGATGCCAATGCAAACACAAAGGATATTGC 3152574 30 100.0 36 .............................. TCGGCCCGGGGATCCAGTGTTTCATAAATAGGCTTG 3152508 30 100.0 36 .............................. CTGTCACCTCAATTCGTCTATTCCTCTTCCCACCAC 3152442 30 100.0 35 .............................. TATCCTCATGCCGCAAGGTACATCACCAGCATTGA 3152377 30 100.0 35 .............................. AGGTAACATAGACGAAATTTAGCTTGTCCTTTTGC 3152312 30 100.0 39 .............................. AGTCCTGTGAATTGCATTAGCTCTATTTCCTCAAACGTT 3152243 30 100.0 35 .............................. CGCTCAGGGCCGCTACTAAGTCTAAATCAGGGTTA 3152178 30 100.0 36 .............................. ACCAAGACAGCGGGGAGGTTATCCCTGGCGTGACCA 3152112 30 100.0 37 .............................. AGATCTTTTCTGAGCTGCCGAATGAGCTGGACCTTTT 3152045 30 100.0 40 .............................. TGGTTATGTCCCATAGCCGCTCTACTCTGATGCTCTGAAT 3151975 30 100.0 36 .............................. AATGAATCAGCAGCTCTTCGTATTCAGGACATCCTA 3151909 30 100.0 34 .............................. ATCTCCCACCTGTCCAATACTGCTTTTTCAACAC 3151845 30 100.0 37 .............................. CAGGTAATACTAAATGGCTAACACCGACTGCAATAGG 3151778 30 100.0 35 .............................. AGCTGCTCACCAAAGAGATCGTCTTTGAGGAAGCA 3151713 30 100.0 38 .............................. AGGAGAAGGATATCGCCTTCTTCTTCTCTCTCGAAGAG 3151645 30 100.0 36 .............................. GCTCGTCCTGTCGAGGCTGTGCCAAAGGTGCCTTCG 3151579 30 100.0 37 .............................. ATGATCTTGCGACACATGTAGAACAAGTGGGGGAACA 3151512 30 100.0 36 .............................. AAGATGAGCTTGAGTCCCGTTCCAGGGATCTCATAA 3151446 30 100.0 38 .............................. CATTTACGGGTTCCCCGATAAATTATAACACCTCTCCA 3151378 30 96.7 0 .....................G........ | ========== ====== ====== ====== ============================== ======================================== ================== 47 30 98.9 36 GTTGTTAGCTTACCTATGAGGAATTGAAAC # Left flank : GGGCCGAAAGAGCTGCTTCAATTGGCCGTCGATGGAGGAATAGGAAGTAAGAACAGCCAGGGGTTCGGATGTGTGGAGATTATCAATGGCTAGTAAATGTCACCGTTTGGTCTGTCCGAAATAGGTACGCGCGTACCTATTTCGGACAGACCTTTTCCTGGCAAAGTGATACTGGAGTTTGGTATTAAAGAGTTTACTTTTTCAACAATCCCAGAATTTCGATTTTAATTTAATCTCTTCTTATGCTAATATTAGCATGAGAGATAGGGCTGATTTCGTTTTAGATAAACTAGCCGGTTTATTACTTCTACCACTAGATTAGGGGGAGGATAAAAGGCTAAGTTTTAATCGTAGCTCTTGTCGTCGATGTGCAATAAGGTAAAATTGCCCGGGGATCGACGACAAAGAATATGGCTAAATAAGCGGGCTAAGAAGAGAAGTGCTGATTTGGTTAATTTTGGTCAATGGCTGTAATGGCTTATTTAATGCTGGTGAAATGT # Right flank : GCTCAACAGTGATCTTGCGCTCAGAAAACCCAAATTATCGTTATTAGCTTACCTATAAGTGACCTTTTCTCGATAAAACGGACACTCCAGAGTTAGGGATTCTCTCAGAATCGCAAGATTGCTTCTTTTTTCATCTCAGGTAAATACTCCAAGCTGCTCTCTCAGGGGCCAGCCCCTGAAACCCCGCCCCCGCCGGGTGGCAGAAGAACGGTCTTTAAACTGTTCTGAGGTATAAGGGTCTTGGCCATGTTAGCCAATCAAGGGCAAGGACTTCGTCTCGGCTGACGCCGCCCCTTGACAAGCATCTACCGAGTTGATAATCAGCATCACAGATAAATTTTTCCCGGCAATGGTGTCAGGTGTGACACCATTGCCGGGAAATTCTATATTAAGGGATTAAATATGGAGAATAAAAGCAGGCTATGATATACTGTTTCCATACAATGGATATTAAGGTCGATAGTGATAGTTTCATAACGGAGGATGATCACGATGTCAAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGAATTGAAAC # Alternate repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 5 3182164-3179147 **** Predicted by CRISPRDetect 2.4 *** >NC_007907.1 Desulfitobacterium hafniense Y51, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3182163 30 100.0 37 .............................. GTAATTCTCCGGTTTCAGTTACTCTATGATTTTCTTC 3182096 30 100.0 35 .............................. ATGTGAACAATCTTAAAACAAGAAAAGAAGTCTTA 3182031 30 100.0 36 .............................. ATGAAAACAAAAAATGTATAATTTATCATGAACCAA 3181965 30 100.0 37 .............................. TAAGCTAATCTGGAGAAAGTGAGGATATTTGTGTAAG 3181898 30 100.0 36 .............................. TAACTAGTTAACTAGTAAAATATAATAAATGAAAAA 3181832 30 100.0 36 .............................. GTTTGAAGAGCTGGGGTATGGTGAACCTGATTATAA 3181766 30 100.0 36 .............................. CTGATCCTCCGAGGGATAAACAGTCACCAATTCCTC 3181700 30 100.0 35 .............................. ATTGTTGCCTTACTAATTTTCGGGAGGTTGAATCG 3181635 30 100.0 36 .............................. TAAAACCGAAAGCGGCGCGCGAGCCGCCATGAACCG 3181569 30 100.0 36 .............................. TACTCATCCAATACGTCTGCTCTCAGCTTTTGCCAC 3181503 30 100.0 37 .............................. ATCTCACGGCTCATTCTCTTTCCCTCCAGTCAATCTA 3181436 30 100.0 37 .............................. AGTAAGTTTTATGCTGCAGCTCTTTCCACTCTTGGCC 3181369 30 100.0 36 .............................. TCTGTCCGATCCAGTCTGCCGATGTAGTCCAGTATT 3181303 30 100.0 36 .............................. AGCTTCTCTGCCCCCGGCTTAAGGAGGGTTGGCTTG 3181237 30 100.0 35 .............................. CGGGGATCCGTGTGAGACTTGTAGCGCAGATTTGA 3181172 30 100.0 37 .............................. CCGTTATCATAGTATTCCTGCGCTAAAAAGCGCATTG 3181105 30 100.0 36 .............................. GCCGGGATTCTGTTTGATGAAGTTGCGCTGATGCCT 3181039 30 100.0 36 .............................. CTGCAGTTCCCATTCCGGAGATCGCCGTGGATGGTG 3180973 30 100.0 35 .............................. ACCCATCCCCGGGTTGAAAATCCACAACTCTATCA 3180908 30 100.0 35 .............................. CCCGGGATATGACGGATTATATCGCTCAGGAGACC 3180843 30 100.0 35 .............................. AGCAGTACCGGTATTTGGATTTAGGGAGCGCCATG 3180778 30 100.0 37 .............................. CAAAGAGGGGATCTACACAAGTCAGCTAATCGACATA 3180711 30 100.0 36 .............................. CTGTGAAGGTAGACCGTGTACTTTCAGTTCGTGTAG 3180645 30 100.0 35 .............................. CCCAGCTTTATGATGGTCTGCAGATTCCGGGCAAC 3180580 30 100.0 37 .............................. AATTCTCCAACGGTGAAGTGGATGCCAAAGGGGTAAG 3180513 30 100.0 35 .............................. TCAAACTTTGCACTCATGCCTTCTTCCCTCCCAAC 3180448 30 100.0 37 .............................. TATTCGTTGTACTGCTGCCGGTATCGGTAGCTATCGC 3180381 30 100.0 35 .............................. AGGAGATTTTAATTCTGCCCCTTCTTTCATGGGTT 3180316 30 100.0 36 .............................. ATCTTTCGGCATGTTTTGAATAGGGCAAAGTATACA 3180250 30 100.0 39 .............................. GTGATCGCGCCCTCACGGTGGTGCATTGGTTCTGGTACC 3180181 30 100.0 39 .............................. CTCATTTTCCAAGCTTGCTTAATCTCGTCCAGCGTCATA 3180112 30 100.0 35 .............................. CCGCAGAGGTCAATGGGGCTGGAAAGTCTCTATAC 3180047 30 100.0 37 .............................. TGTTTCGATACTCGATAACGCCGGCTTCCTGATCATC 3179980 30 100.0 36 .............................. CTCTGCCAAGGTGATCGCATTTATCACCCGCACTTG 3179914 30 100.0 36 .............................. GTACTTAAACCAGTTTGTAAAGTCGCGACTCATCCC 3179848 30 100.0 36 .............................. ATGCAATTTACGGGACTCTGCGACAAGAACGGCGTG 3179782 30 100.0 39 .............................. GCTTTTGAGTGGGGTGGATGCGGTCTTGTTGTTGCTGCG 3179713 30 100.0 38 .............................. ATGTCCACGATTGACAACTTATCGCCAACCATCCCTAC 3179645 30 100.0 35 .............................. GAGCTTTTGGGCCCTACCTTACAAGTCAGAACATT 3179580 30 100.0 35 .............................. CGGAAAATCGCGTCCATAAACGCCAGATTAGCCGA 3179515 30 100.0 37 .............................. TCAAGACCCAGCGCGGTTCGTCTCAATGTGTTCGGAA 3179448 30 100.0 38 .............................. GGGAATGGCCAAAAACGACCTTCAGATGAATGAAGATG 3179380 30 100.0 38 .............................. TCTTTGTGCCCGGCACTCCAAGCGTAACTAGTGTAACC 3179312 30 100.0 37 .............................. ATGCGGATATTAAATTCTTTCATGGCATCGGCAACTT 3179245 30 100.0 39 .............................. TCCAGAATTTGAATTGTTTTTTCTAATTCAAATTTTAGT 3179176 30 93.3 0 ...C......................T... | ========== ====== ====== ====== ============================== ======================================= ================== 46 30 99.9 36 GTTGTTAGCTTACCTATAAGGAATTGAAAC # Left flank : TAAGAATTTAAAGCTTGGTACGGGGAGGCTATACGTGGCTGGCAGGAGGTCCAATCCCTAATCCAGCCATCTTCTGTCATTTAACCCAGAGCGGATGCGATAGCATGGAGAGGCTTTGAGGAGAACTAGTTAGTGAAGGTATAAAAATGGAGAGGGAGCCAACCAAGGTGATGGTGAGTGCTTGAAGGATTTTATCTTTGCTTTCAGCGTTCTATATGCTAACATGATCAGGAAGGGTAGAAATTGATAGCCTGATGTCGAAGTGGGTTAGATAGGACTAGTAAGTCTATACAATAGTAAAAAAGGCGATAAATATAAAAATTACGAGTTATTCAGAGTCAGGATTTCAGCATGTATTTTGTCGTCGATGTGCAGTAAGGTAAAAACCCCTGGAGACCGACGACAAAGAATAGGGCCAAGTAAGCGGATTGAGGAGCAAAGATCAGTTTGGATAAATTCGGGTGCTTGCCGAAGATGCTGATTTAATGCGGGTAAAATGG # Right flank : TGAGGTTGAAGGTCACAAATTTATTGAGTGCTGCTAAAGACAATTTAAAATAGAAAACTTTCTTAGCTTAGTATAGAATTAAAACAACTTAAGTAATAAGAATACTGCTTTGGGGGTGAAAAATTTGAAAAAGATGTTTTTAGCAGCTTCGGCTCTGGCATTGAGTTTGGCTTTGGTCGGCTGTAGTAATGTGAAAGTAAGTGTGGAAGAAAAGGATCAAAGTACGTTATCCGTAGAAAGCATACAGTTGGAACGAAAAATTATTATCAGAAACTCCATAGCCGATCCTTTGCCCGAAGAAGCTCAAAAAGCCCTGTCTCTGCCGGATAAAGGTGGTCCACAACGACTGCCCAATGTTGATTTAAGCACTCCAATCATAATTACTAAAATGCCTTATCCTGAAAGACCCCAGCCATAGCAATAACAGCGGCAGCGGCGGAATGGAGATTAGTATGAAAGAATTGTACATGAATCACTTTGCAGATCACTACGGCTTAGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //