Array 1 257-470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBXC010001285.1 Streptomyces sp. PIP175 1285, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 257 30 100.0 31 .............................. CCTCGCGCCAGTCCCCGACGACGTGAAGTTC 318 30 100.0 31 .............................. GCAGCGGCACCACCACGTGGACGCTGGGGGC 379 30 96.7 31 .............................G TCCAGTGCATCGGCAGTGCATGACCTGTGCA 440 30 86.7 0 ..........C....A..........G..T | G [449] ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.8 31 CTGCTCCCCGTGCACGCGGGGATGGACCCA # Left flank : TACGGGGCCGGCCGCCGGCCCCGTACCGTGGAATCTCCCCGACGCCGGGCCCGGCGGCCACCGCCGTGGCTGCTTGAGTTCGGCGTGCGGTCCCGCCCATACGGTTGAAGCTGAACTCGTAGCATTGCGTGAAGAGTTGGGCCTCGCACACCACGAGGCGCACAGACTCCTCGCTAGACAGATGGTGGAAATGTCCGAACCTTCATTTGTTGCTCAGAACGGCCTCCCCTCTCGATAAACACCCAGGTCAGCGAGAC # Right flank : TGGGGCACCCCCTGGTCTCCAGGGGGTGGATCGATCCAATCCAAGACTGGCGGCCGTGAGCCGGCCGTGTGCGGTAGCTCCGTACGGATTCCTGTAATACGAACCAACTAGTAGGCGTAGAACCCGGCGCCCGACTTTCGGCCCAGGCGGCCGGCCTCGACCATCCGTGCCAGCAGCGGCGGCGTCGCGTACAGCTGCTCCTTGTACTCCTCGTACATCGACTCGGCCACCGAGACGACGACGTCGAGGCCGATGAGGTCCGCGAGTTTCAGCGGCCCCATCGGGTGGGCGCAGCCCAGCTCCATCCCGTTGTCGATGTCCTCGCGCGTCGCGATGCCCGACTCGAACATGCGGATCGCGGACAGCAGATAGGGGATCAGCAGTGCGTTGACCACGAACCCGGAGCGGTCCTGGGCCCGGATGGCGTGCTTGCCGAGCACGTCGCGGGCCAGCGCCTCGGTCCGCTTGAGCGTGTCGTCGCTGGTCGTCAGTGCCGGGAT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3839-4169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBXC010000282.1 Streptomyces sp. PIP175 282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3839 29 100.0 32 ............................. GCCACATGGGCCGGGGGCGGATCCACTCACAA 3900 29 100.0 32 ............................. GACCGGCGTCTACGAAATGCCCCTTGCCACGG 3961 29 100.0 32 ............................. GTCCCGGTCGGGAGTTCCTCGGCGAGCAGGCG 4022 29 100.0 32 ............................. TCCTCGGCGAGGAGCCGCTCGTACGGCGTGCT 4083 29 93.1 29 .....................G......T CCCGACCTAGTTACGTAACTAGGCACGTG 4141 29 93.1 0 .G..........A................ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CCGGGGGTCCAGCGGGCGCCCGTCCGGCTGTGTGAAGAGCGCCCTGTGCTCCTGCCACAGCTCGCCCGCGGCGGCCCGTGCCTCCTCCTGCTGTGCCTTGTGCTCACGTAGGTGGGGGATGAACGGCGGCGGGATCGGTACGGGGTTCGTGCTCTTCGTCTTGGGCCGGGTGAAGGCGAACCCGCCGCCCTTTGCGCTCCGGGCACGCGCGGGCGTGCCGGGTGCAGCCCTTCGGGCAGGGCCCGAAGCGGTGTAGCCGGGCGCCGCAGGCGTGCGGGTCCTTGCAGCCATGTCGCCACGTGAGCCGCTGGAGCTGCCACTGGGGGTGGACCACGGTGGACGGGTATGGATGCCATGGCGCCGAGTAGGAAGGCCCGTGCGGACTGTCGTACCTGTTGCGGGTGGCCGCGCTACCGCAACGGCAATTGACGGGAATGCCCGATTCAGAGAAAGCGATTGAAACCTGGTGCCTGTGCTGGAAAGGATGCAGGTCAAGAAGG # Right flank : CGCGCCGTGCTCCTCAGGCTGCTTGGTCTGCGGCTAAGGCAGGTTCTCGGATGTGCATGGACGTGCGTGGAACGCTCGAACAACTCGTAGCGCGTAGGTCGTCGGTTCGGATCCGGCAGGGGCTCAGACACCCCGGATCAGCCCAGCCTGAGCTGGGGTCTCCTGCTGCCTGGGGCGTTCGTTCCGTGCTGCTCCGGGCCACCGAAAATCGGCGGCGGTTCCCGCGCTGACGTGCGATTATCGGGGCGCCGATGAGTTCCGGCTGGTCCGCCGGTCTGTCTCTGTGGAACGACAGAAACCATCCAGTCCGCGGCCCCGGCTGCCGGGTGACTGTGATCAGGAACCCCAGCGAGGAGCTGTCATGCGAGCTGCGATATCCGAACGACCCGCCGCCGCGGACGCGGACGGGCGGACGCCGACCGTCGTGCGGCTGCTGGTGCTGGCGACGTTCGTGGTGATCCTCAACGAGACCATCATGATCAACGCGATTCCGCGGCTGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6193-3664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBXC010000002.1 Streptomyces sp. PIP175 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6192 29 100.0 32 ............................. GTATGGCACCCCTCACATTGACATCCTATGGT 6131 29 100.0 32 ............................. AGGCCCGTCGACAGCAGCCCGGGATCCATCGC 6070 29 100.0 32 ............................. TCCCTCCCTCCCGACGGGTGCACGCACGCCTC 6009 29 96.6 32 ............................A GGACGAGCAGGGCTACCAGGGCCCGGATCTGC 5948 29 96.6 32 ............................C CGCGCACGAGCTGCACTTCCGCCGGCTGGAGG 5887 29 100.0 32 ............................. CGCGCGGTGATAGTGGCGGGGGCGGGCACCGG 5826 29 100.0 32 ............................. TTGATGGGGGAGATCACGGTGGCGGACATGTT 5765 29 100.0 32 ............................. TCGTAGGGCACGCGCTGGTCGAAGTGGAGCCC 5704 29 100.0 32 ............................. ACGCTCAGAGGATGGGTGATCTTCACCTGCGC 5643 29 100.0 32 ............................. GCGGTGTGCTGTCCTCCGGGGATGGCGGTGCG 5582 29 100.0 32 ............................. GCTTGTTGCTTCTCGACCACTCCGGGGTATCT 5521 29 100.0 32 ............................. CCGGGGAGCTTGCGGATCACGGCCGGGATCAG 5460 29 100.0 32 ............................. CTGAGATCCAGGCTGAGGGCGCGGTCTCGGCC 5399 29 100.0 32 ............................. CGGACCCGCGCATGCAGTTCGAGGACGGGACG 5338 29 100.0 32 ............................. CCCTCGCGAAGGGCAGATGAGGAGGAACATGC 5277 29 100.0 32 ............................. TCGGCTCACCTGCTGCCGTCGCATCTCGGGGG 5216 29 100.0 32 ............................. CCCTCCATGACGGTGGCACTCGTCGCCTGCCA 5155 29 100.0 32 ............................. CGCACCGCAGCCGGCCATCGAGCCGCAGGACC 5094 29 100.0 32 ............................. CCCGTGTTCGAGGCCATCGGCACGATCGTCGT 5033 29 100.0 32 ............................. CCCGCGACGCGCTCGCTGCGCAGGTGCAGCGC 4972 29 100.0 32 ............................. GAGACCCCTGTGGGAAGTTCGATCGTGTTCGA 4911 29 100.0 32 ............................. CGGCAGGCGTCTGCCCGCAAGGCCGCGCCGCG 4850 29 100.0 32 ............................. GCGGAGCAGGACCTGCGCGCCGCCAAGAACGG 4789 29 100.0 32 ............................. GACAAGATCCTGGAGCAGCTGGGCGACGGAGA 4728 29 100.0 32 ............................. AGGTCGTTCGTGCCTCCGTCGAGCGCGAATTG 4667 29 100.0 32 ............................. GTCAAGGAGCTGGAGAAGGATCTCCCCTCCGA 4606 29 100.0 32 ............................. CGGACGGAGAGCATGGCCAACCCCCTTGATAG 4545 29 100.0 32 ............................. CCGCCGACCGTCCGCCGCGAGGAGTGGGACGA 4484 29 100.0 32 ............................. AACTCCGCCCCCACCTCAATGCCCATCAGCCG 4423 29 96.6 32 ............................C CCGTTCGTGCCGCGCGGTAGGAGGCCGCGGAC 4362 29 96.6 33 ........................A.... CCCATCGGGTCGTCCTCTTTGCTCCAGCGGATC 4300 29 93.1 32 ..............T.........A.... TCGAACGCTCAGCCACAATCGGCACGTCGATC 4239 29 86.2 32 ........T.....T.........A...A CTGTAGCTTGCGTAGCCGTTCGCGGCCCGTGG 4178 28 93.1 32 ....................-...A.... ATCCGGCTGGCGCTGTGGGTGCTGGTCGTCGG 4118 29 96.6 32 ..............G.............. GTCGCGATGGGGATCATCGGCATCGGGATGGT 4057 29 89.7 32 ...........G.........T..A.... ACGCCCCGGTTGCAGAGCGCACGGCGGTAGCG 3996 29 100.0 32 ............................. GCGAACAGGCCGTGCTCGACCACTACGACACG 3935 29 96.6 32 ...........G................. CCGTTCGGCATCACCGCGGACGCTGCCCGCAA 3874 29 96.6 32 ........................A.... CCGAACACGTAGAGCGTCAACGGTCCTCCCCA 3813 28 96.6 32 ....-........................ GGCATTGGGGCGCTCGCCGGGGCGGCGACCAG 3753 28 96.6 32 ...........-................. GCAGTGGCCACATCAAGGCCGACCAGTGCACG T [3739] 3692 29 96.6 0 ......T...................... | ========== ====== ====== ====== ============================= ================================= ================== 42 29 98.3 32 GTGCTCCCCGCAGGCGCGGGGCTGTTCCG # Left flank : TCCCCACGATCTCCCCGCAACGAGGCCGGGAGCTGCTGCCATGCGCGTTCCGCCTGGCTCTGAAACTGCACCGAGATCTTCCCGATGTCATGGAGCGCCGCCCAGAAGGCAACCACGCTCCCCGCCCCATCCTCGTCGGATCCCAGCCCCAGTCCCCGAGTGATCGCGCCACGCTGCCCAGGCGACAGGAACGTGCTCCACAGAACCTCCACCGCGGCGGCGGTGTCCAGCATGTGCCAGATCAGGGGGTAGGGCTCATCGAGCCCCTTGAACTTCCCCCAGAGCCGCTCCTCCAGCTCCAAGATCGTGCCACGCGACATCACAAGCGCTTCTCCCGCGGATCCGACATGCCGACTTCCCGTTCCTCATATCGGACCACGAGCCACTGACAACGAGGCCGGAAGCACAGATCTTGACCGAGATGCGTACCATCGGGCCATGGCCACGATCAAGTTGGTAAAGGAAGTGCAAAGCGCTGATTGAGCCCCAGGTCAGGAAGG # Right flank : CTGATCGCCGCCGCCCGGCAGGACCCGCCACGGTGCTCCCCGCAGGCGCGGATGGCCAACGTGCTGCGCAGCATCGGCTCAGCGGCACGGCAAGCTCTCCCGGAGTCGGAGGCCTATCCCACGAGGGTCAGATCCAGGTAATCCAGGCAGTTAGTGCGATGGCCGCCATGACGGCGGCCACGCTGGTCCACACGATCGGCAATCGCCGGAGCACCGGACGCCGCGTCGTTTCGGCGATGCTAGCTTGCGCTGAGCCGCGTCCGTGGGTAACCGCGACGGGGGCGGTGACGGTCACGGAGGAGTTGTCGCCGGCGACGATGCTGATGCTCTGGAGGGCTTGGGCTACCTGCTCCGGTGTCGGGTCCTGCTGGCCCTTCAGCATCGCGGCCCGTAGTTCCCCGACCAGTTGGACCAGCCGGGTACGGACCTGATCGAGGACCCCTTCCAGTGCTGATGGGTGGACGGCCCAGTACAGCCTGTGCACCTGCCTAGTGGAGCTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //