Array 1 48174-44854 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHZW01000013.1 Bifidobacterium aerophilum strain TRE17 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48173 29 100.0 32 ............................. GCGCCAGCCAGGAATTCACCGCCACGGTCACG 48112 29 100.0 32 ............................. GCGCCGCACCCATACAGCTTCGTCGTGGACGA 48051 29 100.0 32 ............................. TCGTACTGCGCGGTGCAGGTGACGTTCGCGGC 47990 29 100.0 32 ............................. GCCGAGCGGCATATCGGCGGCGGTGACGTCAA 47929 29 100.0 32 ............................. AGGTCAGCTACTACCCGCGCGGCGACGGCCTC 47868 29 100.0 32 ............................. GCCGCTGCAATGAGTGATTCCCTGTACAGCCA 47807 29 100.0 32 ............................. CGTTCACCAACTTCTCTCTGCATAACAATACC 47746 29 100.0 32 ............................. GAAGGCAGGAAACCGGGCTATGTGGTCGTGCG 47685 29 100.0 32 ............................. AAATGACCGACAACACCGATATCTCGCTTGAG 47624 29 96.6 32 ............................A GGGGAAAAATCGCTGGTTCTATGAAGATATGC 47563 29 100.0 32 ............................. TGCTCGGCCGGGACGGCTGGAAGTGCGCCATC 47502 29 100.0 32 ............................. GCACCGCACCCATACAGCTTCGTCGTGGACGA 47441 29 100.0 32 ............................. ACGTTGAATATCACCTGCAAGGTCAATGCGAC 47380 29 100.0 32 ............................. CACAGAAAGGCCCGCGCATGAGCATCGACATC 47319 29 100.0 32 ............................. CCAAGGCCGGCCGATCCGTTGCCGGAGGCGCG 47258 29 100.0 32 ............................. TCGAAGAACGCGGTGCGGTCAGGGATGTCGCC 47197 29 96.6 32 ............................T GATAATGACGCCGATCGCGTTACCGACGATAT 47136 29 100.0 31 ............................. GAAGAAGACCCAATCGAAAAAAAACCATCGA 47076 29 100.0 32 ............................. ATGCGAGTGGGTCAGCTCGAAAGATGCGCGCC 47015 29 100.0 32 ............................. AGACGCCGAACGTTTGTCGTAACGCTGTTGTT 46954 29 100.0 32 ............................. CCGGCCAACGCGGCCACGGCCTCGGCATGGTC 46893 29 100.0 31 ............................. TTCGTGCTGCCCCATGAGGTCGACGTGAACG 46833 29 100.0 32 ............................. GTGCACAGCCGCGACGTGATGCGCGACCTCGT 46772 29 96.6 32 ............................T ACCTCTGGCGCTACCACAGCAAAGGCCGACCC 46711 29 100.0 32 ............................. AACTGGCGGACGCGCGGCAAAATGCCCGGCAC 46650 29 96.6 33 ............................T AACACCCGACAGCATGTTAATTACACCGTTAAA 46588 29 100.0 32 ............................. TTCCGCAAGCAGGAACATGACGATCAACGTCC 46527 29 100.0 32 ............................. GTCATGGACGCCGACCCCGACGCGGCCGGCTA 46466 29 100.0 32 ............................. CGGTGCTGTCATTGAGCATGAAACCGCCCTCG 46405 29 96.6 32 ............................T TCGCCGGTGTCCATGTTCCAGTAGTTCAGGCC 46344 29 100.0 32 ............................. CGCCGTACTGCACCCCATCCCTGAGGTTGCCG 46283 29 100.0 32 ............................. GAATGATTCACGGAAAAGCTCACGCACGTTTT 46222 29 100.0 32 ............................. GTTTGTTGATAATCCCACGCCAGAGCTTGCGG 46161 29 100.0 32 ............................. GACGCCATCATGGCAAAGAAGGACAACGCGGG 46100 29 100.0 32 ............................. GCCGGGCCGGGTCTTCCTCCCTCATCCGGTCA 46039 29 100.0 32 ............................. GCGCTTACAACTCTCGGCACTGACGCCACATT 45978 29 100.0 32 ............................. TGGAAGGCCGATGACCTCAAGGAGGTCGCCGG 45917 29 100.0 32 ............................. AAAACGCCCCGCCCGGCAAGCAGTGCGGCTCA 45856 29 100.0 32 ............................. CCGGGCCAGCAGGTCAGCATCCTCCTGCGCTT 45795 29 96.6 32 ............................T GGTTCGACGGGCTTGCCGGCCCGGACAACGTG 45734 29 100.0 32 ............................. TAACAGGAATTGGGCGGTTTGGTCTTGTTTTG 45673 29 100.0 32 ............................. GCATAGATCGATGCTGGGTCGAAGAAGCGCAG 45612 29 100.0 33 ............................. CCGTCCAGCAGCGCCTTCTTCTTCGGGTCGAAG 45550 29 93.1 32 T...C........................ CTCCTTGCCTCGCATTCGATGGGCAGGCCGGC 45489 29 100.0 32 ............................. TCGCCGAGGAACGCCTTGATGCCGGTGTCCGG 45428 29 100.0 32 ............................. TCGGCAAATGGATACCCGCCGGCATGGCCCAA 45367 29 100.0 32 ............................. TTATGACGCCATGTCAGGCTATAGGCCTGAGC 45306 29 100.0 32 ............................. CATGCCGGCCGTGTTCGGCACCTCCACGGCCA 45245 29 100.0 32 ............................. CCGGCAGTACGACCCACGCGTGGATGAAACCC 45184 29 100.0 32 ............................. GTCAAGATCACCCTCAAACAGGCCACAGCCAC 45123 29 100.0 32 ............................. GAACGGTTCGAGGCGAACATGCGCGGCGTGAA 45062 29 100.0 31 ............................. GGCAAGGCAGCGGTTTTTTGAGCTGACCAGC 45002 29 96.6 30 .......T..................... CGGACTACCGTATAAGTACATCAGGCTCAA 44943 29 86.2 32 T....T......T..............T. TTGGGTGAGGCGCAACTCGGCCAGGAGTGCGA 44882 29 69.0 0 .........ATG..T..A.T...CCG... | ========== ====== ====== ====== ============================= ================================= ================== 55 29 98.6 32 GTTTTCCCCGCACCCGCGGGGATGATCCG # Left flank : CCGGGCGTCTATGTCGGCAAGGTCTCGGCTCGCGTGCGAGAACTGTTATGGAACCAGATTCTTGACAATATCGGTAGTGGACGTGCCGTCATGGTTTATCCCGCAGATAACGAACAAGGCATGTCATTTAAAGTGCACGGACAAGAATGGTCACCGGTCGACTTTGACGGGCTGACGCTCATCATGCGTCCGAATGGCAGCCGTCGGCAACGCTCATACGGGAACCGTAAAACCGGCTGGAGCAACGCCGCACGTTATCGGAAATACGGTCGTTGAACGTGGCGGCATATACGTATGAGCAGGATATATCTAATGATGTGGTTGCCAGCATTATCTAAAGCGGACAGATATGCCGGCGAAAGCTGCGGGAAACGATGCATCAGATGTTGGTGAGACTCGAATGTGCAGTTGCTGCGTACATGACTGGATTCGTTGTCGGCACTGTCACAATCGAATTTTTCCGCTTGCTTTTATTCGAGATTTCCGTTTAGAATCAGACT # Right flank : CCGGTGGTTAACGCGACGATGATTTTTCTGTTGTTCTCCGTACAGGAGGGATAACCTCGTTGTGGTTATTGCTTGCCGATTTGCGCCTTGGCTATGTCTTATTCGTGTTTTCGTGTTCTAAAGAGCATATTTCGGCGGTAAACGACGATCAGGCACCGTATGGAATCCGGTTATCCGATATCGCCGGTCCCGTCCGATCAGCTTGCCAGGAATGCGGGGATCGCCTCGGCGGCGGCGTAGCCGGCGCGGTACATGCGCTCCAGGCCCTCGAACGACTTGCTCAGCGTCGACAGGCCGTACAGGCTTTCGGGCGCGAGGATGAGCACGCGGCCGTCCTTCTCGTATTCCTTGGCCAGCGCCACCTCGTCGTTGTACGTCTTGTACCGTTCCATCAGCCGTTCGGCAGCGGCCGGATACGAATGGCGCAGGATACGCGCCGGCGCGATGTCCTTCTTCTGCTCGCGCAGCACGTCCTTCAGTCGCGTGAGCACCAGCACCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36626-34646 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHZW01000018.1 Bifidobacterium aerophilum strain TRE17 sequence18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 36625 33 100.0 35 ................................. CTATATGGTCATGAGTGACACCCGTATTCGGGAAC 36557 33 100.0 33 ................................. CAGTCCGCACATGGGTGTCGTCTCGGCTACCGC 36491 33 100.0 33 ................................. GTGTCTTGTCTGGTGTCGCTCGTGTTGTTGTCG 36425 33 100.0 34 ................................. TTCACCCCGCGCTCGTACTCGGATATCGTGACTT 36358 33 100.0 37 ................................. GAGTCCGAAAGAAAACAACGCCGACTAAGGCGTGTGT 36288 33 100.0 34 ................................. AAAGACGGACGCGTACTTCTGTCATAAGCCGCTA 36221 33 100.0 33 ................................. GAGGATCGGCGGCAGCAGTTGCGCGATGGCGTC 36155 33 100.0 35 ................................. CTCACGCAAACCGAGCTCGGACGCAAGGCGTGGGC 36087 33 100.0 35 ................................. CTCACGCAAACCGAGCTCGGACGCAAGGCGTGGGC 36019 33 100.0 34 ................................. GATGGGTTCTATCCATGCGGCGTGGCTAGTACAT 35952 33 100.0 35 ................................. TTGGTGAACCCGTTGGGCTGCTGCACGCACACGTA 35884 33 100.0 35 ................................. TGTTTGAAGGTGCGGGTCGCGCCTTGTTTGGTCGT 35816 33 100.0 35 ................................. ATAAAAACTTGGTTGGAAACAATGGCGCGGAATGG 35748 33 100.0 35 ................................. CAATCGGAACAAATCACACAAACCACTCACAGACA 35680 33 100.0 34 ................................. ATCGAGGCTGAAATCCTCGACTATTTCGAGAATT 35613 33 100.0 35 ................................. CGCGTACACGCCCACGGGGCCCGCGAACGGTTTCA 35545 33 100.0 34 ................................. CAAACTTTCAACCACGGGAGATACTACCATGACG 35478 33 100.0 36 ................................. CTTAAGTCCCATAGACTCACCTCGCTTTCGTCTGGC 35409 33 100.0 33 ................................. CTCGGTCGACAGTTCGGGCTTCTCGCTTACGGT 35343 33 100.0 33 ................................. TCATCTCGGAGGCGTGCGATGAAGCCCTCCAAG 35277 33 100.0 36 ................................. CTCCCGGAAGCCACGCAACCCACAGCTTACCGGGGA 35208 33 100.0 34 ................................. CTCAAGGCGCAAGGCCGTTCTCGCGCCGATGTCG 35141 33 100.0 34 ................................. TTCTCCCCTGGCCGGCATTTTCCAGGGCCGTGCA 35074 33 100.0 34 ................................. GGCCAACCCGCCGCCATCGGCATCGACACCACCG 35007 33 100.0 33 ................................. AGTAGATGGTGGGAATGTCGAGCTGCGGCTGTT 34941 33 100.0 35 ................................. CAGAACTTAATAGGGAGGTGCGCAGGGAACGGTTA 34873 33 97.0 35 .....................A........... GTGTTGTCTGAAACAAGTCAGATTCAAAACCCCAA 34805 32 84.8 24 .................AT..A......-.C.. CGCTAGCGATGTAATATCGCTATG T,A [34780,34784] Deletion [34750] 34747 33 87.9 35 ..T.T....T......................C AGAAACAGGTTTCTGCGGTTCCTACGCGATTGTCG 34679 33 87.9 0 ............G...G....A.......G... | A [34661] ========== ====== ====== ====== ================================= ===================================== ================== 30 33 98.6 34 GTCTCCCTCCTCACGGAGGGAGCGGATTGAAAT # Left flank : TGTGTTCGAATGTCTGGTATCGCCTTCGGATTATCTGGTACTTCGACACGAGCTGGATGACATCGTCGACCTTGAGCGCGACAGTATGCGGTTCTACAATTTGGGAGCGAAGTATTCAACTCGAATAGAGCATGTTGGTCGGCAGCGTCATGTTCCGGTTGATGATGTGATGATGGTGTAGGGGCGAGCGCGGATGCGGTGTTTGGATGAGTTGGATAGGTTGCTGCGGGGAGGCACGATATGGAGTCGGGCTAGCATGGTGCGAGGCGTGAGCTGACGGAGAATCGCCGGACGTTCGCACCTCGTTGAGACAAAGGGCGTGTGCTTTTTACCTATGATTGCTCCCCGAATGTGGGCTGTTGCTTGATATGTGAATAGTGTTTTTGAGATATGGAATTTTGGCGTTGCACTAGGACGCCTCGCATCGATATGTCCTGATATGATAACGCTGTAGCATATGCGAGTATTTCACGATGTGGAATACGTGTCTTATGTATGTA # Right flank : GATACGGACGTTCTAGAGCAGGGGCATAACCTTCTTCCTCTCGGGAATGGTTCTGGAATAGGGGTGCATCATGACTTATACAGCCAACGCACTTGCGCGTCTGCTGGAGCGGTTCGTCGCGCATATCGCCGTGGAGCGGGGGCTGGCGAAGGCGACGGTCACGGCCTACGAATCCGACCTGCGCGCGTACCTGGACTGGCTCGCGGGCCGAGGCATCGTCGAACCCGCGGCCATCGGCAGACAGGACGTCGAGGACTACGTCGCCGCGCTCGACGAGGCCGGTGAAAGCGCGCGCAGCAAGGCCCGGCGTCTGGCCAGCATCCATATGTTCCACCGTTTCGCTTTGGCCGAACGTGTCGTGTCCGACGACGTCGCGGCTCCCGTCAAAGCTCCCAAAGGCGCGAGCGACTTGCCGGACGTGCTCACCGTGGACGAGGTGAGTGCGCTGCTCGATGCCGTCCCCGTTCCCGACGGCCCGTTTGCCGCCACTTCCGAAGGCG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCCTCACGGAGGGAGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACCCTCCTCACGGAGGGTGCGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 57363-57590 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHZW01000006.1 Bifidobacterium aerophilum strain TRE17 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 57363 36 100.0 28 .................................... TACCGCGGTCATCCGCGCCCGCGTGGGA 57427 36 100.0 28 .................................... GGATGCTTCGCTGGGTGAAATCTCATTG 57491 36 100.0 28 .................................... ATGTGCTGTGTATGGACGTGCCAGGCAT 57555 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 4 36 100.0 28 CAAGCTTATCAAGAGGGGTGAATGCTAATTCCCAAC # Left flank : GAATGGTACCGGTCTGACGATTCCGAGTTCTTTGAACGATTTTGCGCAACAATATGGTTTTGTACTGCGAAGGGCGTATGGATCGGCTTCCCGTGCCTGAATATGTGGGAGTGAAATGAAGAAGGATGAGGATAGCGGCGGTATGTGGTGTTTGGTGATGTTCGATTTGCCGGTCAAGACCAAGCAACAGCGTAATGCTGCTACTGATTTTCGAAACATGCTGCTGGATATGGGCTACGGTATGGTGCAGTACTCCGTCTATGCCAGATATACGCCCACTCAGGCGGGCAATCGCGCAACGGTGCAGATGATCAAAGCGGCGTTACCTGCACAAGGATATGTGCGTGTCCTACATGTCAGTGATCATCAGTGGTCATCGGCGTTACGATTTTCTAATTCGGAGCAGTTGGATGATGCGGAAACGCCTGAGCTGTTCACGCTTTTTTTGATCGTGAAAATATGCTGTAAGCCGCAGAAAACAGCCCCTCTCAAGAAGTGAT # Right flank : CGAACCGCAGGAACCCACTCCACACGTTTAACGTTATCAAAATGTTTCAAATGCATTGGCCCATCCTCATGCAAGTTACGAAGCTTCTCAGGTGCCGTATCACCAATCTTCGGCGAGAAGGAATTCGTCGATGCGCCGGTGTTCGATGCCGTCGCGCGGGCGCAGGATCGGATCCATCGACACCACGGTTTTCGGGTAGTTATCCGGAACGTCTCGGAATACTCCGAACTCGCGCTCGGCGGTCTTATCACTGTCGATAAGATACGTCACCTGTACATATCGACGTTGGGCGCCTTTGTCAAACACGAAGTCGACTTCCTTGTCATTGACTGTGCCCACGGAAACCGTATAGCCCCTGCGTAGTCCTTCCATCGCAACCATGTTTTCCAACACGCCTTGTATCTGTGCGGTGCCGTCGCCGATGATTGCGTTACGTAACCCATGATCGGCTACATAGTACTTCTGCAGTGTTTTCAGCACCTGCTTGCCGGCCAAATCAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAGGGGTGAATGCTAATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //