Array 1 61149-61311 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCTJ01000017.1 Haemophilus haemolyticus strain 3P5 contig00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================== =================================================== ================== 61149 21 100.0 51 ..................... CAAGCGATGATATGGACTACAGATGAACCGTTCCCGTCTCAATCCCTTTGG 61221 21 100.0 51 ..................... TTACTATCAAGGCGAACAAGAAATGATGTCAAATAGTCTCAATCCCTTTGG 61293 19 90.5 0 ...................-- | ========== ====== ====== ====== ===================== =================================================== ================== 3 21 96.8 52 AACAGGGCAATGTCTTTCGAC # Left flank : GATAAACTAGATTTCGAAATGGCATATCCCCCACTCGCCAGCGGCGGTTTTATTTGCTACGGTGAATATCCAAATATTCAACACAACTTAAAAGCATTGGAAGATGTGTGGGATTATAGCTATGATCGCGTGCCTTACTACGGCACAAACACACCGATTGATGAATGTTATGAATGTGGTTTCACCGGCGAATTTGAATGTACCAGTAAAGGTTTTGTTTGCCCTAAATGTGGCAATCACGATAGCACAAAAGTGTCTGTCACTCGACGCGTATGTGGCTATCTAGGCAGTCCTGATGCCCGCCCATTTAATGCAGGAAAACAGGAAGAAGTGAAACGGAGAGTGAAACATTTATAAAAGTGCGGCTAAATTTAGCCGATAACTTAGTACATTTCTTGAAAAGAATAGGGCGTGCAATACGCCCTTTATTACGCCTATATTACTCCTATTAGCTTTTCGATATTTTTATCAATCATAAATCCCTACCTCAATCCCTTTTA # Right flank : | # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:-0.5, 7:-0.60, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACAGGGCAATGTCTTTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 34619-34224 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCTJ01000028.1 Haemophilus haemolyticus strain 3P5 contig00031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 34618 37 100.0 34 ..................................... ATGTAATGACCAACCGTAGTTAACGTCTTGGTTC 34547 37 100.0 35 ..................................... TTGACATGTCGTACTCCTTTAAGGGTTAAAGCTTG 34475 37 100.0 34 ..................................... GTTCTAGGCGTTCCATATTTAGATCCTTATTTTT 34404 37 100.0 36 ..................................... CTATGAGTACCAGGCATATTCATCAATTCTTCATAA 34331 37 100.0 34 ..................................... AGCTCTTGACGGAGCTTTTCCATTTCAATCTCAT 34260 37 91.9 0 ................................A.A.T | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 98.6 35 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : CCGGCATGCGGTGCCGAAAACCGCTATTGTGTCATAATGTATTAACATTATAAAAATGCTACTGGTATATTAAAAACCCCCCTGTTAAAATACACCGCACTTTTGACTGATTTTTGAAAAAATAAGAATGATAAAAATCGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTTGAACACACCACTGA # Right flank : TAAGTTTTTACTTCTATCTTAAAATTATTGCTAGCTTTGGCATTCCCCAAAATCTCCGCTAAAATAACCGCACTTTTATCGTCTCTTCAAGGAAAGCAATATGTCAGATATTCTCAATAACCTCATTCATCTTCTTAAACTTGAAAAAATTGATGATTTAATCTTTCGTGGAGAAAGCCAAGATTTAGGTTTTCGTCAAGTATTTGGCGGACAAGTTGTGGCTCAAGCATTATCAGCGGCAATGCAGGTGGCGCCAGAGGATCGCATTTTACATTCTTGTCATGCCTATTTTCTTGCCCCAGGAGAGAGCCAATATCCGATTATTTACGATGTGGAAACCTTGCGTGAAGGGCGTAACTTTTCTGCATTACGCGTGAAAGCCATTCAACATAAAAATACCATTTGTCATGTAACCGCTTCTTTCCAAATGCCTGAAAAAGGTTTTGAACATCAAAATACGATGCCAAATGTTGGTACACCTGAAGACTTTACAGATGAAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 9765-9945 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCTJ01000068.1 Haemophilus haemolyticus strain 3P5 contig00085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 9765 37 100.0 36 ..................................... CAATATCTAAACCGCTATTTTGCGGTGTTTTCGTAA 9838 37 100.0 34 ..................................... TTTTAACTCACGGATAACTTGATCCTCTTTCTTT 9909 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TTTGCTTCCTTGATTGATGTTTTCAAATAAGCTAAACAATTTTAGATTGTCTTGAGTTTCACTTTTTTTGCCTAAAACAATGTTTTCTGCTTGGGGTAAAAAAGAAGATATATCGATTGGTTGAATAGGAAAAGAAGGCAGAGATAAATGATGCTTTTCTGAGAGTTGCTTCAAATAATGATGCCATACAGAAAATGCAAGAGAAATTGTGTCTGACATAATTGCTCCATTTAATGAAAATTTGAATGAAGTATAATCAAATTTTGAAAAATTGTCAGCAAATACAAATTTGTAAAATTTATTTTTATTGTAGCGAGGACTGGCACATCTGAAAAACTCTGTTAAAATACACCGCACTTTTGACTGAGTTTTGAAAAAATAAGAATGATAAAAATCGTTCAATATTTAATCAAATTAATACCTAACTCTTCAGGCATAAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTTGAACACCCCACTGCT # Right flank : C # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 38761-38531 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCTJ01000071.1 Haemophilus haemolyticus strain 3P5 contig00093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 38760 32 96.9 34 .............G.................. AGTCCAAATATCTCGCTCTTTCCCAAACTTTGAT 38694 32 100.0 33 ................................ TCACAACGTGAATTAATGCTGATTTTCGGTGAT 38629 32 93.8 35 ...........T....A............... ACCCCATACCACGCAGACCCTAAAGTCACGGGGAA 38562 32 90.6 0 ..T.......C.A................... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 95.3 34 GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC # Left flank : CATTTGGCGATGTACAAATACAAACGTGACTGGCGGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACAGCATTAAGTACAGAGCAGTACAACCGTGCGCAAGCTGAAAAGCAAAGGGAAGATGAAATTAAAAAAATCAACTCTAACTTTAAATATGAAATCAAGTAGGTAAATTATGGAAAATTTAATTAGATTATCTTTATTGGCTTTATTCTCTATTACTCTCTTTGCTTGTAATGAAGAAAGTAAGGAAATGACGGTTTATGATTATCTTGTGAATAAACCTTTGCTAGATAGTGATATGCAGAATTGTATTAGTGGAAAAGAAAATAATGTGCATAAGTGCGATATAGTAAAATCTGCTTACAACAAATATAACTTCTTTGAAAAAGGTCTTTATTCAGAAAAAGACTTAAAAGAATTAGGCAAAAAATAACTAATAAAAAGGGGATTGTATGGGTGTTTTTACTTATGTAGATAATGCTGTGTCTACTGTATTAA # Right flank : GCTCACACATTAAGCCAAGGGCAACCCTTACAATGCAGCGGTTTCAGTCAGCGTGCGTTAAAATAGCTCTGTTTTTTATTATTTAAATGTTATTTTTTTGTTAAAAATATTTTACTTGAGTATAATGCTCAACATTATTCCTCACGGCAGAGAATCCGTAGAATAATGAGATTAATTGTAAATATTAAGGAACAAAAATGGATTTCAATAGAATTATCACTCACATGAATGATCATCATCAAGATGATATGGCTGCTCTTTGTAAAAAATTTGGTGGTGTAAATGAAATCACGGATGTGACGCTAGTTAATGTAGATTTTGGTGGTTTAGATTTTAAATATAATGGTGGTAAAACATTACGCGTGGAATTTCCACAACAAGCTGATGAAGGTTCAATTAAACAAGCGATTATCAATCTTTGTGTAGAAAATAAACCAGTTGCAAATTACGATCGTATCAAAGCTAAAATTGATGAATTTCGTCAAGAATTTAAAAGCTGT # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.80,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 39693-39194 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCTJ01000071.1 Haemophilus haemolyticus strain 3P5 contig00093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 39692 32 100.0 35 ................................ ATCAGTACTTTGCGTCGTTCCGTATAATCAACATT 39625 32 100.0 36 ................................ GCCAATAGCTTTTATTGTCTCAACAAGATTTCCGCT 39557 32 100.0 35 ................................ ATCGCAACAGATCGAGCAAACTCATCTAATTGCGA 39490 32 100.0 34 ................................ GTCTTGCTCGTAATCAAAAGACGAGAATGCAGTT 39424 32 100.0 34 ................................ ACTCTTGTCATATATGACTCGGATGTTAATAACG 39358 32 100.0 35 ................................ TGGATAATGCGGATGCCGAAAACTGGCAAAGCTAT 39291 32 100.0 34 ................................ ATTTGGCGATGTACAAATACAAACGTGACTGGCG 39225 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 100.0 35 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGACCCAAACGGTCAAGCGCGATTACGCCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGCGATGTCACGCCTGACCAGTGGGTTATGTTGAAAAACAAACTGTTGGAAACCTACGATCCCACATGTGACAGCCTGCGCTTTTATCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCAGCAGTGGATGTATTTAAAGACGTGCTTGTTATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGGCGGTATGGCCGTTATACTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACGGTGTTTAATACGCTGATTTTTCTTGCTTTTTTATGTAGGGA # Right flank : AGCATTAAGTACAGAGCAGTACAACCGTGCGCAAGCTGAAAAGCAAAGGGAAGATGAAATTAAAAAAATCAACTCTAACTTTAAATATGAAATCAAGTAGGTAAATTATGGAAAATTTAATTAGATTATCTTTATTGGCTTTATTCTCTATTACTCTCTTTGCTTGTAATGAAGAAAGTAAGGAAATGACGGTTTATGATTATCTTGTGAATAAACCTTTGCTAGATAGTGATATGCAGAATTGTATTAGTGGAAAAGAAAATAATGTGCATAAGTGCGATATAGTAAAATCTGCTTACAACAAATATAACTTCTTTGAAAAAGGTCTTTATTCAGAAAAAGACTTAAAAGAATTAGGCAAAAAATAACTAATAAAAAGGGGATTGTATGGGTGTTTTTACTTATGTAGATAATGCTGTGTCTACTGTATTAAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGTCCAAATATCTCGCTCTTTCCCAAACTTTGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //