Array 1 158037-157093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVLM010000007.1 Escherichia coli strain BECS9 NODE_7_length_228784_cov_69.5938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158036 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 157975 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 157914 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 157853 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 157792 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 157731 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 157670 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 157609 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 157548 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 157487 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 157426 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 157365 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 157304 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 157243 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 157182 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 157121 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184802-183736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVLM010000007.1 Escherichia coli strain BECS9 NODE_7_length_228784_cov_69.5938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184801 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 184740 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 184679 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 184618 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 184557 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 184496 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 184435 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 184374 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 184313 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 184252 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 184191 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 184130 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 184069 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 184008 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 183947 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 183886 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 183825 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 183764 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTATCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //