Array 1 886385-886942 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MWRT01000001.1 Staphylococcus intermedius strain 14S03307-1 NODE_1_length_913248_cov_73.8756_ID_1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    886385	    36	 100.0	    29	....................................	GGTAATCAATTTTAACAATGCACAAAGGT 	
    886450	    36	 100.0	    30	....................................	TTGAAGATGATGCTAATTTAGACACTTATA	
    886516	    36	 100.0	    30	....................................	AATTATATGAACAACAAAAACAAGTCACTG	
    886582	    36	 100.0	    29	....................................	ATTTTCACCTTTACCCCATGCAGATTCAC 	
    886647	    36	 100.0	    29	....................................	TTTGGTACAACTAATGTAAATGAAATTGG 	
    886712	    36	 100.0	    29	....................................	TGAATTTTATAGCTTTTCTATTAGGTAAA 	
    886777	    36	 100.0	    29	....................................	GGAATTTGATTATGGAGAAGGAGATGAGT 	
    886842	    36	 100.0	    30	....................................	TTTAGTAGAAGTAAACGAAGCATATACGTC	
    886908	    35	  86.1	     0	.......................T...T.-.G.C..	|                             	
==========	======	======	======	====================================	==============================	==================
         9	    36	  98.5	    30	GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	                              	       

# Left flank :   TCACTCAACAAAAGAAAACATTTTGATTGTATTATTTCCGGAGTCTCACCTCGGTATTCACGATATTAAAGTATTTATGCAACTTTTAAAGAAGTATCGTTTCACAACGATCGTCTTCACCAATCATCCTTCTATCATCATAAATGAAGAAAACATATTTCTTTGTAAAAGTAATAAAGCGTGTCATGACATAGAAAAAATAAAGGAAGAATTATCGTTATTAATTCCAGAAGAAATGGTAAGTCATCAATTGACTAATATGATTGCATATCACGAATTTTTAGGTGAAAACCTTTCTGAGTTTGAAAGATATTTTAAGTTTATAAACCATTACAATTAAGTTATACTTAATTCAATGATTGACAAGTAAGTAATGACTATGTGACTTACTTTGCGATTGAGTTGGGTAAGACGATTCCTCGTTTTTTATGTTTTACTACTTCTAATAGTGTGAAGCCTCAATTCTCTCCAGAATACAGTTAAGAATTTTGAGATTTGAG
# Right flank :  CCCCACTTTTAAATCAATTACGAACTATATTTACTGCCCTCACTATCTTTTAACTTCAATATAAAGGTATGGAGGGGCATTTTTATTTACGCGAAATGTCCACCAACGTCCCTTTTCCATCTCCATGTTATAATAGCCACAAATGCTCATTAAAACTCAAAAGAAGGTAGGGGAAATCTATGGAAGCAATTATTGCACGACAACCGTTCCAATTATCCGAGGGACAACAGTTTGAAAAGGTCGCACGTGATATACCTACACCAGAGGGACACGATGTTTTGGTAAAAGTCCATGTGACAGGGGTGAACCCGGTCGATACGAAAACGCGTCAAGCGCCTCTCAATGCGAAGGAACGTGTACTTGGCTATGATGCAGCAGGCGTAGTCGAAGCGGTTGGTGATGAAGTTACGGATTTCAAACCAGGTGACCGTGTGTACTATTCCGGCTCCAATCAACGTGATGGTTCCAATCAAACGTATCAGCTCGTAAATGAAAATTAT

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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