Array 1 62191-58868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHS010000062.1 Shewanella algae strain CCUG-24987 24987_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62190 29 100.0 32 ............................. TAACCGGGCATAGAAATGGCTAAGAAATTGAT 62129 29 100.0 32 ............................. GATAGGTCAAAAGGGACTATTTTTGCCGAATT 62068 29 100.0 32 ............................. TACGGTATCCCGAAAGAGATCACCATAGATAA 62007 29 100.0 32 ............................. AAACCGCCATCAGCTTGATGGCGGCGATAGTC 61946 29 100.0 32 ............................. GTTATCTTGCCAACCTTTTCAGCGCACTTTGT 61885 29 100.0 32 ............................. CCTATTTGCTACTTCCGTTTGATGAATGGGCT 61824 29 100.0 32 ............................. TCTTGCCAGAGCCGCGACCGCCATACGGGACG 61763 29 100.0 32 ............................. AATCTGACAGCTATGGAACGCCGCCTTGGCTG 61702 29 100.0 32 ............................. CGTAACTGAAATTTCGCCCTTTGGTTCTGGCA 61641 29 100.0 32 ............................. TCAATCTCTAACGTGGACATTGCTCTGTGCGA 61580 29 96.6 32 ............................C TTCTTCGATATGCGAAAGCTGCGGCTGAGGGC 61519 29 100.0 32 ............................. GCCTGATTACGGCTAGTGTTAGAGATAAAGCT 61458 29 100.0 32 ............................. GGTATGGGCGACTGGCGGTTTTACCTTTGCCC 61397 29 100.0 32 ............................. CAAAAAAACTTCGCTTCCGTACTTCTTTTCGA 61336 29 100.0 32 ............................. TTCATTGGTGATTTTAGTCAGGTAGATTACAA 61275 29 100.0 32 ............................. AATTGGTTTAGGTCGCGAGGAATTGTTAAGCA 61214 29 100.0 32 ............................. GAAAGGATTGACTGGATAATTTCAGCTTGTGA 61153 29 100.0 32 ............................. CTTGCAACAATCATAGGCGGTGGACATTGAAG 61092 29 100.0 32 ............................. TCTGATCGAGACTGGATAATTGCTGGGATGGC 61031 29 100.0 32 ............................. CATATATGACTTCTTATCACCATCATTAACCG 60970 29 100.0 32 ............................. ACTAATCGGATATTCAGGGCGGCGGTGAGAGG 60909 29 100.0 32 ............................. TAGAATTGCGGGTGGATTATGAATAGCGATGA 60848 29 100.0 32 ............................. ATGATATCCCAGCCACGTTTACGAGCGTGCAA 60787 29 100.0 32 ............................. CTTCACCTGTAGACTTTTTACCGAATGAATAA 60726 29 100.0 32 ............................. GCTTAATCGGTATCACTGTAAAACCAACTGAT 60665 29 100.0 32 ............................. GTAAAAAGCGGTCTGGCAGGAAGGATTAGGGC 60604 29 100.0 32 ............................. CAGCAATGGAAACCACTCAGACTCGCACAGAC 60543 29 100.0 32 ............................. CAAGTGTTCCTCATGCAGGTTTGAATAACTCT 60482 29 100.0 32 ............................. ATACATCGATGCGCTGCGGCGTAAGCCCTGAC 60421 29 100.0 32 ............................. TAAGCTCTCCGGATGGGCTTACACAGCTTGAG 60360 29 100.0 32 ............................. TTAAGCAGGAAGTGATGCAGGTTTATACAGAC 60299 29 100.0 32 ............................. CCGGGAGTAGAGCCAGTTTCGTTCTACAAAAA 60238 29 100.0 32 ............................. CCTTCCGAGGTGAATCAGCTTTACCGATCGCT 60177 29 100.0 32 ............................. GCTGGTGGACGGTCATCAATAGCCACGCTTGA 60116 29 100.0 32 ............................. CTGCTTTGGCCTTGCGATTAGCAACTGATGCT 60055 29 96.6 32 .T........................... CACAGATCCAGTACACCTAAAGCAGTGTTGCG 59994 29 96.6 32 .T........................... ATGATTCAATACATTTTGGGCGCTACTGCCGC 59933 29 96.6 32 .T........................... TTACTGAATATGTACAGCCTAAAATTATAACC 59872 29 96.6 32 .T........................... CTTTTCAAAAACTCCGAGTAATCAATAGGAAC 59811 29 96.6 32 .T........................... CGTGCGCGATGGGTCTGAACTTGACTCTTGGA 59750 29 96.6 32 .T........................... GCGGTGCCCTGTAGCTTGTCAGAATGCCACAG 59689 29 96.6 32 .T........................... CCGGAAAAACCACGATATAAACGGCACCGTAA 59628 29 96.6 32 .T........................... CTCGCGCCCGCGATAAATCCAGCGCTCTATTA 59567 29 96.6 32 .T........................... CCAGTTCTGATGAAAAGACGTGTATAAATCCA 59506 29 96.6 32 .T........................... ATACCGAGTTGTTGAGTACCCTTATCGCTAAT 59445 29 96.6 32 .T........................... GTTTCCGGGGAAATCTTATCTAGGCTGTCGTA 59384 29 96.6 32 .T........................... TGACGATATCGGCACTCAGAGCGATTCTTAGC 59323 29 96.6 32 .T........................... CAAATGACCAAGACCAAACGTGATAGCAGCGA 59262 29 96.6 32 .T........................... CATTCTGTGCATGAATTAGGAGGGGATATGAT 59201 29 96.6 32 .T........................... CGCATATCCAACGCATCGGCAATCGCCATTAA 59140 29 100.0 32 ............................. TAATAGGTGGCCCCAATCTGGCGCGACTTGAG 59079 29 100.0 32 ............................. ATCGCCGGGAACAAAAAGCCGGAATTGCCAAA 59018 29 100.0 32 ............................. CTGGCCGCTCAGGCACAGATCAGTGTCGATTC 58957 29 100.0 32 ............................. CGGTGTCGTCAGAATCCATAAAGGCAGCATAG 58896 29 93.1 0 ..........................GT. | ========== ====== ====== ====== ============================= ================================ ================== 55 29 98.9 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : AGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCCTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGGGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAGTCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATTGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : TATTTCTTTACTGTACAACTCCAGCAATATCCGAACGTCTTGCATTTGTGGGGCTGAAGAGGTCGAAACTGAGGTGATCTAAATAGCGGCCCGACTCAAGGCAGCATGTCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACTGATAACTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCTGGCAGGCTCTGGCCGAGCAGGCTGTTCCCGGCAAACCAGTAGAGTATTTGGCTGTCGAAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCAGTGTAGCTAACCGCGACTCTTTGGCTGCAGGCAGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTTCCGAGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCACCCACGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //