Array 1 14558-14291 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQM01000002.1 Cronobacter sakazakii strain M30 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14557 28 100.0 32 ............................ AATGGCGGGCGGCGCGGGCGCACCGGATTTAA 14497 28 100.0 32 ............................ CTGTCGCCGTCCTCTCACCCGCACAGCGTGAC 14437 28 100.0 32 ............................ GTCAACTGACAGAGCGAGGTTGGGCGCAGTTC 14377 28 96.4 32 .................T.......... GCGCACGGAGCGTCCCTTTGCAATTGGCTGAT 14317 27 89.3 0 .....................CG-.... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGACGTTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCTCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 796134-794824 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQM01000012.1 Cronobacter sakazakii strain M30 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 796133 29 100.0 32 ............................. CTAGGCCGCGTTTAACCACTCCTGCCGCTCCC 796072 29 100.0 32 ............................. CGATGATGCATCATGGTTTTACTGATGAAATC 796011 29 100.0 32 ............................. CCGGCGACGGGAACCCCACGATAACCTCCTGC 795950 29 100.0 32 ............................. AAATTTATGAGCTAGATCCGGCGCTCTCTCTC 795889 29 100.0 32 ............................. TACAGCGCCACATTCAAGCAGAACAACAGACC 795828 29 100.0 32 ............................. CGGTGGCTTTTTTGATCGGCTGGTGCAGTGCG 795767 29 100.0 32 ............................. CCAGGCCTCATCCGCCAGGTCTGGCAAAACGT 795706 29 100.0 32 ............................. CGTATATACGGCTGCGCATAGATGCTGCTAAA 795645 29 100.0 32 ............................. GCTGCGCGGAGGACGAATTAAACACCGGCCTC 795584 29 100.0 32 ............................. TACTGCTTAACGTCGGCCAGATACCCCGCGGG 795523 29 100.0 32 ............................. TTAAAACGTTCTGCAGGGGCGCTGATGATGTC 795462 29 100.0 32 ............................. CTATGGGGCTCTCGGTCAAAAAAGAGCGCAAA 795401 29 100.0 32 ............................. CGTACAGCGAACCACCGGCAACTGTCGCGCCA 795340 29 100.0 32 ............................. TTTCGCACGCGCTGCCACGCGTCCGCCTGGGC 795279 29 100.0 32 ............................. CCGCCGGTCAGATAAACAACGTCGTCAGGCAC 795218 29 100.0 32 ............................. TAAACATCTTCTTCAGCCAGCCCGAACGTCGG 795157 29 100.0 32 ............................. CGAGCGCTGTTCGCGAAACGTGGGCGGCGTTC 795096 29 100.0 32 ............................. TGGGCCGAGGCGGGGCTGATAAATATCACTGA 795035 29 100.0 32 ............................. GCTGACAGTTTCCAGTTAAAGGCAATAATTAC 794974 29 100.0 32 ............................. TGCTGTGGTGTAGTTAGGAAAGGCCAGCGAGG 794913 29 96.6 32 ........G.................... GTCGTGAAGGTAGCTGCGCTTCCAGGCAAGAT 794852 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCACTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 825069-822539 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQM01000012.1 Cronobacter sakazakii strain M30 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 825068 29 100.0 32 ............................. CCAGCAGCAGCCGTTTAGACGTCTATACGTCC 825007 29 100.0 32 ............................. CCTACCGACTCCGAGAGAACGCGTACACAACC 824946 29 100.0 32 ............................. CGATGTTGGCGGCAGTTCGTAAACAATTCCCG 824885 29 100.0 32 ............................. TTTCGACCGCATAGTCATGAACCCGCCTTTCA 824824 29 100.0 32 ............................. CCGGTAAAAACCTGAGCTACGACGTCGAGGCG 824763 29 100.0 32 ............................. CTCAAACGCTGCGATACCTGTTGTGCCGCTAC 824702 29 100.0 32 ............................. CTGTAAATATTATCGTTGGAATATCAGTTGAA 824641 29 100.0 32 ............................. CCACCATTCTGAATGAGGCGGTTGGGGCGCTC 824580 29 100.0 32 ............................. GCGATCTGGCGGCCCGTATCGAGTATCTGTCC 824519 29 100.0 32 ............................. TGATACCAATATCGTATCATAATACCCCACTA 824458 29 100.0 32 ............................. CGCCTGCAGATTAGCCAACCGTTTATTTTGCA 824397 29 100.0 32 ............................. CGACTCTCGGGAACGGTGTCGTCTGTCAGCAT 824336 29 100.0 32 ............................. CGCAGCCGTCGCACCGCCCCACACAATCGGAG 824275 29 100.0 32 ............................. ATTTCTTTCACCGTGTTATGGATTCGAACACC 824214 29 100.0 32 ............................. CTTCGTGACCTCATGGCCAGCGAGATCGATAT 824153 29 100.0 32 ............................. ATCATCGACAAACTCTTGCTGCTCTCCGATAA 824092 29 100.0 32 ............................. AAAGAACACTGCCGCCTGGAAGTAAACGAGCT 824031 29 100.0 32 ............................. CCGGGGAAAGCCGGTGGCGGCCTGGTCGCTGT 823970 29 100.0 32 ............................. CGACGCTATATTGCGGAGACGCGCTCGAGATA 823909 29 100.0 32 ............................. CGCCATGAGGGTGTTCGTTACGGGCTACTGCA 823848 29 100.0 32 ............................. TATTTTTTACCTGCATGCTGATATATAAACAA 823787 29 100.0 32 ............................. GCAGCGTTTTGCCCACCAGCAAATTTCCAACA 823726 29 100.0 32 ............................. CGTGAATGGCGTGATTACTGTTGTAAAGAATG 823665 29 100.0 32 ............................. CCAAACCACGTAACTAATCAGATCCGCGTAAT 823604 29 100.0 32 ............................. GTCATTTTCGCTTTCCGCCAGGCACATAGAGC 823543 29 100.0 32 ............................. CCTCTGACTTTCCGGTCGCTCAGTCGTGGCAG 823482 29 100.0 32 ............................. GCACTGCTGCAATTTTATCAGCAGCGTTTTGG 823421 29 100.0 32 ............................. TGAGTTGTCGTTGTGCCGCCGCCGTCGTCGTT 823360 29 96.6 33 ............................T GGACGTCTAAACGTCTGCTGCTGGCACCCAAAA 823298 29 100.0 32 ............................. CAGGCAATGCTGCTGCTGGCGGGCTGGTGGTA 823237 29 100.0 32 ............................. ATTACGCCTCTGACTGAGACTTTTTGCCGTCC 823176 29 100.0 32 ............................. TCGTCGAAATTACAATTACGCGGTGAAACGTA 823115 29 100.0 32 ............................. GGTGAAACATCAGGCGCACATCTCTGCGCAAG 823054 29 100.0 32 ............................. GTTATCATTTTATTTGATAGTCATTTAATTTA 822993 29 100.0 32 ............................. ATAATTTCTGGGTGAGCGCCGGTCATCCAGAG 822932 29 100.0 32 ............................. TTCATACGACGAGACGCCCGCCTCGGCTCTGC 822871 29 100.0 32 ............................. GCGTACTCCACCGACTACCCGGAAAAGGGCGC 822810 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 822749 29 100.0 32 ............................. ATTTTCGAGCAAAGAGGCAACGGGTCTTCATC 822688 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 822627 29 96.6 32 .C........................... AACGCTGAACTGGCGAACACGCTGCAAAATCT 822566 28 79.3 0 .C.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGTTGACTGTAACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATAACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGAGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTAGAAGGCGAAAAAATGCCAATCAATACAAAGGGTTACTTTTAGT # Right flank : CTCAGGCTCTTCGCGCCTGTCACTCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //