Array 1 549385-549686 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG964405.1 Bacillus ndiopicus isolate FF3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 549385 33 100.0 33 ................................. TTAGCAAAAACAACAGCACCTAAAGTTTTACCC 549451 33 100.0 34 ................................. ATTCCTGATAATATAGCACCTGCACCTCCTGTAG 549518 33 100.0 34 ................................. CAAAAACTCATTAAAACCAACTTTACTGTCTGGT 549585 33 100.0 36 ................................. CCTGCTACTAGTGCAACATTGGATACAGCAGCAAGT 549654 33 93.9 0 ........................T...A.... | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 98.8 34 GTCTCTCTCTTTATGGAGAGAGTGGATTGAAAT # Left flank : AACTCGTGCAGAAGCAGCAACAATTTTACAACCATTGTTTTAATGGATGAAATGTAGCGATTCGCGCATAAGTAGTGAAATTCGTATATAAGGTAAGAATGGTACAATCATAAAATAAAAGCGCATGAAATCTAGTGGAAAGCTTTGATTTCATGCGCTTTACTCATGCTATGTTCTGTTCTCTTTTCTATTTTAGCTCTGTTTAAAATAGTATATGATTTAAGGTTAATATTTTTCTTGTAATAAATGTAATCACCGATTTGAAAGTGTTGGACCAATGGGAAGCTTCCAGAAAAATAATTGCTAAATTAAATTTAATAGAAAACAATAAATGAGGTTCGGTGCGAATGTGAAGCGAACATGATTTACTAGGGGGATTCGCACCAATATTTTGAATGGTTTTCCATTGAAATGGGAATTTATTTAGGTTAATATTACTTTAAAGATTTATTTTTTGTTGAAAACCAATGATAAATATTATTTTTTTCTTGTTTTTCACA # Right flank : TGTAACACACCTCACTTTTTCGTCTTTACAAAGTGCTGCTAAAAAAGCAGTTTAATTATTATTTATCTTTGTTGCTCCACAATCAAGCCCGATTGTTTAACTTTCAACTATTAACCCAAATCTTCGATATTGATAAAGGCTTTTAACCATCATAGACAGGCTTTAAATTATGACGTAGTAAAGTAAATATTAAATTTCAATGGCTCATACAATTAATTAAGCTGATACTATTCTTAATAGGGATCGCGTTTGTTTTAAGTCACAGTTATAGAAATAAAATTGTTTTATTGACAAAGGGGAGATACTGTGTGAACGAAAATGTAAACTTGTCAGAAGATAAAAATAATGAGGATATAAAAATTTCAATCGTAATACCCGCTCATAATGAAGAAAAGTATATTGGAAAATGCTTAGAATCTATTTTGCAAGCCTCAAAGCTAATTAAAAATCAAGTTGAAATCATAGTTGTGTTAAATCGTTGTACAGATAGAACGGAAGAA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCTCTTTATGGAGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 551312-551952 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG964405.1 Bacillus ndiopicus isolate FF3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 551312 33 100.0 34 ................................. TTGACCTGCTTTTTCATACTGTCGTATGCCTTGC 551379 33 100.0 35 ................................. TCTACATCTCTAGAAATAACGAACGGAGCGACCAC 551447 33 100.0 37 ................................. AATTTTCACATCCGATTTTTGTGTCTTCACACGTTGG 551517 33 100.0 36 ................................. TGTTGTCTTCATGTACTTACCCTCCTGTGATGGAGT 551586 33 100.0 34 ................................. TATAGTAGTTGGGTTTGTAGAAGATTTTGCACCA 551653 33 97.0 35 ..............................C.. TAACACTCCTTTTTGTAAACTCTATGTACCATATT 551721 33 100.0 34 ................................. AATAAATAGTATGGCTCTTGTTCTAAGTCAAATT 551788 33 100.0 33 ................................. CGAGAAGGGTGTCCCAAATACTTATACCATATT 551854 33 97.0 33 ...................C............. TTCTGGAGTTTTAAATCTTATACGGGTCTTTTA 551920 33 72.7 0 .........C.C...A.AC....AAC..A.... | ========== ====== ====== ====== ================================= ===================================== ================== 10 33 96.7 35 GTTTCTCTCTTTATAGAGAGAATGGATTGAAAT # Left flank : ATTATAAAGATATATTTAAATAAACAATGACATTAATCAAAGAAGAATAACGCTTTTTGTTGAAGTTACTAGATTATCAGATAGCTTATCTTTAATAAAATTTTTCATAATCTAGCTCATTATTAAAGAAAGAAATGCCACACATCATAGTTATTTTTATCAAGCTTTATTTTAAATCCCCATATGGAGTGTGTGGATGAAATACTAGAACTAGCAAAGAAATTTTTTTAAAATAACTAAATTCAGTATACTAAGAATGTAAAGTAAACTTTATAGAAATAAAAAATACAGGTTATGTAACTACAGTAAATAACTTAATTTACAATAATAGTTATCATTAAGTGCGAATGTGAAGCAAACATGATTTACTAAGGGGATTCGCACCAAAAACGTAGGTGAATTTCCATTATAATGGGGGATTTTTTGGGTTAATATGACCTGAAGAATTTATTTTTTAGTGAAAATCAATGATAAATATTATTTTTTTCTTGTTTTTCATA # Right flank : TTTATATAGTAAATGCAAAGCCTGGAAAATTTTACAGTTCGTAGAATTTTTCGGGCTTATTTTTTATATTTAAGGGAACCAAATTTAAAATACTGTAGTCTAATACTATGAAATTCATGTTTTTCGATATAAAATTATCGATAAACAATAAAAATGAGGTGTTCATAATGAAAAAACAAACGCTTTTCTTAAAAGCAACTTTAGTTATCCTTGCATTGCCTGTACTTGCGCTTTGCACAATTGGTTTCCCGATGTTATTAATGAATCTTACAAAAAGTGGATGGCAGCTTGTCGGTGTACTATATGGTATTGTAGCGATTTTTTATGTAACGGCTATTTTCTATTTCATCGCACTTTATCAAGCATTGAAGCTATTGAATTTCATTGATCATAACAGCGCATTTTCATATGATTCTGTAACTGCACTGAAAAAAATTAAATGGAGTGGCTTTATAATTACAAGCTTGTACGTGGTGTGTATGCCGTTACTCTATATCATC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTCTCTTTATAGAGAGAATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.70%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 562082-565094 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG964405.1 Bacillus ndiopicus isolate FF3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 562082 33 100.0 34 ................................. TGGTAATGCCTTAACCCCTAAATCATTTAGCTCT 562149 33 100.0 36 ................................. ACTGTATCTGGCAATCGTGAAAATTCCAATGACATT 562218 33 100.0 35 ................................. ATCGTCCAAAACCACAAACTTATTTTTCGCATACT 562286 33 100.0 35 ................................. TTTCTCTATGTAGTGAGAAATTTTCAAAAAATCGC 562354 33 100.0 33 ................................. GTAATCCTTGTACTTACCACCACGTGAGCCAAA 562420 33 100.0 34 ................................. AATCTGTAAGTAGTGGTAAAGCTTTAGTCGCAAA 562487 33 100.0 34 ................................. GGGCGGCAGTCCTCTTACACATTGGGTGCAGCTG 562554 33 100.0 35 ................................. AATCGTCATGCAACAAACCTCTCTTCCCATTCCGG 562622 33 100.0 36 ................................. ATGCTTTGGACTTGTGAATAAAATATAGTTCATTTC 562691 33 100.0 36 ................................. ATCGAGCGTAATGAATTTGGTTATGCGGTTGCTTTA 562760 33 100.0 36 ................................. GCTTGAACATCTTGCAAAAGAAGATTAATGCAGGAC 562829 33 100.0 34 ................................. ACGTATGCGAGATGAAACTGGAGCTATAAATACT 562896 33 100.0 37 ................................. ATTGATGCTCCAGTATTTGATGAAACGCAAGCGGAAT 562966 33 100.0 35 ................................. TGTATCCGTATGTACCAGAAGTAAATATCAATAAC 563034 33 100.0 34 ................................. GGCTTTGCTGGTGAGTCGGCGCAAAAAGATTTGT 563101 33 100.0 34 ................................. CCCTTTCCAAAAACGATTGTGCTGCCACTTTGCC 563168 33 100.0 34 ................................. ATCAGTAGAGAATTTAACAAAAGCCTCTAAAGCA 563235 33 100.0 34 ................................. GAATCGGCATTTGCTGGAGTAAGAAAAACTGTTG 563302 33 100.0 34 ................................. TGAAATAGCGACAGATCTAACAGGTAAATTTAAT 563369 33 100.0 33 ................................. AAAACTTATGGTGACATTGAAGGTGTAGAAATA 563435 33 100.0 35 ................................. AGTACTGAAGACATCATCATTTATTAACAACTCGC 563503 33 100.0 34 ................................. TGCTCCATCAATCATGACGAAATCACCGTTTTCG 563570 33 100.0 35 ................................. ATCGAGGGCGACAAATCCTGTCATGGTGGATGGGT 563638 33 100.0 34 ................................. AGAAATGTATATTGGGGATGCTTCGCTTGAAGTG 563705 33 100.0 35 ................................. GTATGAAAGACGAGCAACTAGCGCGGGATATTATG 563773 33 100.0 35 ................................. GCGTTTGACCGTCATTTCAGCAAGTGCAGGCAGAT 563841 33 100.0 35 ................................. TCCACGTGTATTAATAATCCATGTAATTTAGATGT 563909 33 100.0 36 ................................. ACATTGTCGCTCTCCCTTGTCATTTGTGAGAGCATC 563978 33 100.0 35 ................................. GAAATATCGCCAACAATTTATTATGTCAAATGAAG 564046 33 100.0 34 ................................. TCGAGTAGGGTTTAACGGCTTCATTCGTAAAATT 564113 33 100.0 33 ................................. ATTGAATAACGGCTACTATCAATATAACGGTTG 564179 33 100.0 36 ................................. AAATTCAATATTTTTTGATACGATGAAGAATTTCTC 564248 33 100.0 38 ................................. CAAAAAAGAGATTTTGCGACAAATGAGACAAAACGGAC 564319 33 100.0 36 ................................. TATACTTCCAGCTACATTTGCAGATGAAAGAACAAG 564388 33 100.0 35 ................................. TACCACCAAACAAGCCGAAAGAAACGGTTGATTGT 564456 33 100.0 34 ................................. ATTGTTTAAACTTAGAAATTGATATTTATAACAA 564523 33 100.0 34 ................................. TCCAGTGCCGTAATACTTTGTTAAAAATGCTTGT 564590 33 100.0 36 ................................. ACTAGATTTTCAACAGCTAATGGATTTGTTTGTTGC 564659 33 100.0 33 ................................. CAGTATCCAATACATCGATTAGATGAAACGGGC 564725 33 97.0 33 ....................T............ AAGCTGTACACTACTAAAACTAGAGGCCAGAGA 564791 33 100.0 34 ................................. AGTTTAACGTCATAAAGCGCTAAAAAGACGGGTA 564858 33 100.0 35 ................................. AACAAGCACCAGTTCAGCAAGCGCAACAAGTGCCA 564926 33 100.0 35 ................................. GGGTTCGTGGCCAGGTAAAGTGCGTGTACGATGGC 564994 33 100.0 35 ................................. TATTTCGAATAGTTTTAGCTTGTGCTTCTATACCT 565062 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 45 33 99.9 35 GTCTCTCTCTGTATAGAGAGAGTGGATTGAAAT # Left flank : GGAGATTTAGATGCATACCCACCATTTTTAATAAGGTAGGTGAATTATTTTGTTGATTTTAGTAACTTATGATGTGCAAACTAGTACAAGTGGTGGAGCCAAGCGTTTACGTCATGTTGCAAAGAAATGCGGAGAATACGGCATACGCGTACAAAATTCTGTATTTGAATGTGTCGTAGATGCTACGCAATATAAGCAACTTCAACTTGCACTTGAAAAAATTATTGATCCTGAAAAGGATAGTCTTCGATTTTATAATTTAGGAAACAAATATAGTTCAAAAGTTATTCATTTGGGAGCAAAAGAAGCACTTGATGTAGAAGCCCCACTCATATTTTAATTACGCGAACCCCTAGTGCCCATAAAAACCCTAGGAGGTTCGCGCAAAATTTGCAGCAATTAGATAAGTTTTAGAATCCAGACTCCCTAAAATTTATGCAGTATGCTTTAATGATATCAATATATAGTTGATAAATGGATCTACCTGACTATATATTGCG # Right flank : TATGGGTTGGTCTATCATCGTAATCTATCTCTAATTGGTTCTCTCTTCATTGGGAAAAACACTTCAAATGAATGTGCAACCATAGACTGTGCAATTTTCCCTTACTGTTGGAGAGCAAAATGAAAGTGATTGGATCAAAAATTATTTTTATCTATTAATAGGAAATGAAAACGGCAGAACTAAAATTATAAAATTTCATATTTGAATCGGGTATATCTTTAAACCTACAGCAAATAAGCACTGTAGGTTTTTTGCTTGCAAAAAATTTATTTATACTTTTATGTAACTTTTTAGGAAGATGATACGTCTAACTTAAAAAGGAGGGTTGATTATGAAGCGGTTGATGCTTATTGTGACTGGTAGTTTTATGCTTTCGGGATGTGTGGCGCAGCAGGCTGTGATTCCAACTAATACATATGATTTTTTTGCGGAGGATATTGTTTCCAAGACGCGAAATGGGATTGATAATATTGAGCGTTTTTATGCATTTTTTGAGAATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCTCTGTATAGAGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 282797-281231 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG964404.1 Bacillus ndiopicus isolate FF3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =========================================================================================================================================================================================================================== ================== 282796 33 100.0 34 ................................. AGCATCAACGGCACTATTAATCATCACTTTAAAA 282729 33 100.0 35 ................................. TTCCTTCCAGTGTCTAAAGTGTTCGATTTTCGAAC 282661 33 100.0 34 ................................. CTTAAATTTTGATTGTTATAGAATTGTAAACGGC 282594 33 100.0 35 ................................. GAGTGGAGGGATAAGACTATGAAACTATGTGAACG 282526 33 100.0 33 ................................. CTCCTTTTAATAATTTAGTTTATGTATTGGTTA 282460 33 100.0 36 ................................. TGGAAACATTACAGCTCCACCGCCTTATCAATTAAT 282391 33 100.0 35 ................................. ATTTAAGCTGTAAAGAATCAATATAGTTTTTAATC 282323 33 100.0 35 ................................. CAATAGAAGCAAGTTATAACTCCACCGTTATTGTA 282255 33 100.0 34 ................................. TTTTGTATATAATTTTTCTTTAGCCATTATTTAG 282188 33 97.0 33 ...............A................. TTTCACTTTCTCGATTAAGTTTTTTATATTTCA 282122 32 81.8 32 ...........C....-.AT...A.....G... TCATAGCATTTAATATAGCGTTGTGTTCAAAG A [282101] 282056 33 78.8 219 .AA.......C.G..T..A............T. TTGGGGCAAAAGGAAAAATAGTTTTGTGAAATCACATTTACATGAGTAACTAATAGCTAGTGCGAATGTGAAGCAAACATGATTTACTAAGGGGATTCGCACCAAGAATATATGGGATTTTCTATTTAAATGGAAGATGATTTAGGTTAAAATAACCTTAAAGAATTATTTTTTAGTGAAAAACAGTGATAAATATTATTTTTATCTTGTTTTTTTACA AG [282030] 281802 33 90.9 34 .....T....G.......A.............. GTAAAATGGACAAGTCTTTTTTTTCGAAATCGTA 281735 33 90.9 35 .....T....G.......A.............. TTTCAGTCCAACGGATTTATTAATGGGTGGTGTCG 281667 33 90.9 35 .....T....G.......A.............. ATAAAATGAACTGCACCTGAAGATTTACCATTATC 281599 33 90.9 33 .....T....G.......A.............. ACCCATACGGAACCGTATGTTCCATTAATTACT 281533 33 90.9 34 .....T....G.......A.............. TCGTGACATATTGTTTGGAACAAAACGCTCAATC 281466 33 90.9 36 .....T....G.......A.............. ATAAAAGCGATTATAAAAGACTATAAGCAAGCCATT 281397 33 90.9 35 .....T....G.......A.............. TGCAAGCTCTTCAAGGCTCATGTCGTTCAAGCCCA 281329 33 87.9 33 .....T....AC......A.............. CTCTTTAGTGAGGTAATAAGCAAGCATATCCAC 281263 33 81.8 0 .....T....AC......CA.......C..... | ========== ====== ====== ====== ================================= =========================================================================================================================================================================================================================== ================== 21 33 93.5 44 GTTTCACTCTTTATAGAGTGAATGGATTGAAAT # Left flank : AAAGGAAATAAAGAGAACATTACCAACAATTAAAGAAGAGACATCTAACAATAAATATCTTTGGCTAAAAATTCTTGAAAAATAATTAATGTTGCGCGAACCTCAAGTGCACATGAAGACCCTAGAAGGTTCGCGCATGTTATGTGTACTTTTCTCTCTAATCTAGACTAATTCCTAGCCTGATGATTTCAAAAGTTGGTAAATGTAGTACACTAAATAAATGAGATTACTAAATTTTTCGGTCACATTCTATATGAGCGTGTTAGTTAAATTTTAGAAAAGCTGAAAAGCGGGTTGATTAACTAAAAAATAATTATCTAAATATGAAGGATTTACATCAGGTGCGAATGTGAAGCAAACATGATTTCCTAGGGGGATTCGCACCAATAATGCAGAGGATTTTCTAGTGAAATGAGAAACTATTTAGGTTAATATGACTGTATAGGTTTGTTTTATAGTGAAAATGAATGATAAATGTTATTTTTACCTTGTTTTTCACA # Right flank : TAAAGTAGTATACATACTAAAACCTTCAACTTGATGATTCTCGCCACATAACTTGAGGCTGTAACAAAAGTATTTTAGCCAATCAAAAAGCCGAACTATTTAAGAAACAATTGTGAAGTGTTCCTTAATAGCTCGGTTTTCTCTATTTATTACATGGTTTTTACTAAAATATCATTCGGCTTTTTGAAGCTGCAATTTAGTTATGTCCCAGTCACAGTTCATTTCTATCAGTTTTTTAATTTAACAAACAGGACAAAATTTAGATTATTCACATAAACATGGAACATATCTAACCTTTTCAAGGGCTAAATAAGCCGATTATACTTTCAAAAAAGATGGAATATGATACCATTAAAGTAGAATTTAAAAATAGGGGCAGTCGTAATGAAGAAAAATAAGTATTTAGGAATGGGTATCTCATTTGGATTAATCTTTGGTGCTTGTGTAGGGATTTTTATTGGTATCATTATGAGTAACGGTAATTTTTTGTTTAGTCTACC # Questionable array : NO Score: 7.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:-0.89, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACTCTTTATAGAGTGAATGGATTGAAAT # Alternate repeat : GTTTCTCTCTGTATAGAGAGAATGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.70%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 293999-293319 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG964404.1 Bacillus ndiopicus isolate FF3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================ ================== 293998 33 97.0 33 ................G................ AACAAACAGCTGATACTTTGATTAATAATATCG 293932 33 100.0 34 ................................. TGATGTCATACTTAATGCATTGGATTGTTCTCCG 293865 33 100.0 34 ................................. AGCAAGTCATGGAACGGCTAAAAGATGCTGCAGC 293798 33 100.0 35 ................................. ACATCTTATGTGTTGAATAAAAAGAGGATAGCTGT 293730 33 100.0 32 ................................. GGGTCATAGAAAATATCAGGAGCTGCCTCATC 293665 33 100.0 33 ................................. TTGATATTTAATAAAGTGCTCCATACCTCTATC 293599 33 93.9 80 ................G..............C. TTTTGCTTGCGTTGCTCAATAATTATTTGGTTATTGTCTCTCTGCAAAGAGGGAATGTTATTTTTATCTTGTTTTTCACA 293486 33 97.0 35 ............A.................... TCCCTATAGGTTCGGGAATTAACATCGAAACAGGA 293418 33 97.0 34 ............A.................... AAACAATCCTCACAAGCGTTGCATGACCAACAAT 293351 33 97.0 0 ............A.................... | ========== ====== ====== ====== ================================= ================================================================================ ================== 10 33 98.2 39 GTTTCACTCTTTGTAGAGTGAATGGATTGAAAT # Left flank : GCTTCCATTCAACGGCGAACAAATCTACTACCGTGCAAAAATAATTGGCGGCAAAGTCGGTACAGGCACCGGCCCAGAATACAGCAATCCAGAATTATATACAGGAACATTTGAACCAATTTGGCTAGCAAAAGCTGAACTAAAATCATTGGATGTAAGACCAGCAGAGGTAGTGGAATTAATTGTTAGTACTGTGTGAAAAGCCTTTAGAGGCAACGAGTATGGCAGCGTCAGTGAACATCACAAGGGCAATGTGAAAATGTGATGTTCCATCTCTTTAAAACGAATAAATAAATTTTATAGTAACTCTCTATTTGCTATAGTTAAGCTATGGGATTGAGGTGCGAATGTGAAGCGAACATGATTTACTAGGGGGATTCGCACCGATAATAGGTGTAGTTTTCTATTTAAATGGAAGGCGATTTAGGCTAATATAATCTTAAAGATTTATCTTTTGGTGAAAATCAATGACAAATGTTATTTTTATCTTGTTTTTCACA # Right flank : TGTCATATCTTTAAGTGTGCGACCTTTTCCTAAGTGTTTCACTCTGCATAGAGAAACTTTAGAGCTGCAAAACCACTAATAAAATACAAAGATACCGCATAATTTTCAGGTCTACGTGCCTGTATTATGCGGTTTTTTTATTTTTATAAGAATAATTTTTGTATGGAATATATTTTCATTTACTAGGAAGTATGTTATAAATGTATCATATAGTTAATAAGGTATTTTATACTATTTGAACAATATATAGGATGTGTGTAGATGTTTTCATTTATGAGTTGGACAACGTTGCGTGTAACATTTGAAGCACAAAATAGTGGGAAGTTACCGCCTTATCTTGGCTCTACTGTACGAGGAATATTGGGTCATAGTTTACGTAAAATGGTATGTCCCACACCAAACGTAAAATGCTTTACTTGCCTACTTGCAGAAGACTGTGCCTATGCTAAGCATTTTGTTTCACCTCAAAATCCGGCAGGCTCAATTAATCCATTTGTGCT # Questionable array : NO Score: 8.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.39, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACTCTTTGTAGAGTGAATGGATTGAAAT # Alternate repeat : GTTTCACTCTTTATAGAGTGAATGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 75842-75138 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG964406.1 Bacillus ndiopicus isolate FF3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 75841 33 100.0 33 ................................. TTCTAACGTTCCAGGTAGGAAACCTTGCTTCAA 75775 33 100.0 34 ................................. CGATTACGTCATACCCTGCTAATTTATAGCCCAT 75708 33 100.0 35 ................................. CATGACCCTCTCTAAATCTTGAGATGTTAGAAGTT 75640 33 100.0 34 ................................. GCCGCTTGAAAAGATGGTTAAAAAAGCAAAAAGA 75573 33 100.0 35 ................................. GAAAATAAATACTTTTATAATCTGTATCGCATTAC 75505 33 100.0 33 ................................. TGCAGATGTATTTAACAATGTCCTACTATCTCC 75439 33 100.0 36 ................................. TAGCAATGCAGCGGCTTGTGGCTCGGTGATACTATC 75370 33 100.0 34 ................................. CGGATATTTCGGTTTTAAAACTTGTATCATCCCG 75303 33 100.0 34 ................................. CATAGTGTTGCCACTCATAGACTCGAATGCAATC 75236 33 100.0 33 ................................. CCAAGCGCTTGGGAATATCAAATTAGACAATAA 75170 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 11 33 100.0 34 GTTTCTCTCTTCATAGAGAGAATGGATTGAAAT # Left flank : CTCTGTATGGAGAGAGTGGATTGAAATCACATTTACAACCTTTTTCTTTTGCTAAATCCCGTCTCTCTCTGTATGGAGAGAGTGGATTGAAATATCTGCCCCCATACCAAATGCTTGCATTGTATCAGGTCTCTCTCTGTATGGAGAGAGTGGATTGAAATGGTGCAGAGGCTTATAAGCATTGGGCGATTTTGCGTTGCTCTCTGTATAGAGAGGGAGATTAAAATACGCTGTTTTTGTATGGATTCGAAAGTAGCCATGAATTAAATTTTAGTGAAGTAAAAAAAGGGCGGGGGATTAACTAAAAAAACAATCACCTAAATATGAACAATTAACGGCAAGTGCGAATGTGAAGCAAACATGATTTACTAGGGGGATTCGCACCAGAAATGAAAGTGATTTTCCATTAAAATGGGGAGGGTTTTAGGTAAATATAACCCTGAAGATTTATTTTTTAGTGAAAAAGAGTGATAAATATTATTTTTATATGATTTTTCACA # Right flank : CACCACCTTCTGGATGGTCTTCCCATCAAAAATTATAGATGCAATCAAGTGCTAAGCCACATTTTCACTAAAACTAAACAAATTAATTGGTAATAAAACTATAAAAAATGGCTAAGAAAGTGTAAAAATTATTAGAATATTCTATATATAATTTATGGTAGCTGGAAAATTACTTTGCAAAAAATGGAGGTTGGAATTGGATGAAAGTAAAACTTAAAGGAAAATACGTTATTTACTGTGATAATGACAATCATCGTTTATTGGAAGATGGGGAAGTCGTTTATGAAAACGATACGATTATTTACGTTGGTAAAGGCTATGATGGGCAAGTAGATGAAGTGATGGATGTTGGTGAATCTATTATTAGCCCGGGCTTTATTGATTTAGATGCTTTGGGTGATATTGACCATGATGCTATTCATGTTGAACAGCCTGCAACAAAATCAAAAAATCTACTTTGGTCACAGGAGTATGTTGAAGCTGGACCGCAGGAGTTTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTCTCTTCATAGAGAGAATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 2 76682-76115 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG964406.1 Bacillus ndiopicus isolate FF3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 76681 33 100.0 34 ................................. CCTCTAAATCCTCGTTGGTAATATCACCTTTAAT 76614 33 100.0 34 ................................. TTCAAGGAAGGATCGCATCGATGCACAAAGTTGC 76547 33 100.0 33 ................................. AATCCAGAAATAAAGAAAGATATACTCCAAACA 76481 33 100.0 32 ................................. TAAACCAGATACCGACAACACTCTTTCAAAAC 76416 33 100.0 36 ................................. TACTGTTCAGGTTATAAAGAAGAACCTAAATGTAAT 76347 33 100.0 33 ................................. CACATTTACAACCTTTTTCTTTTGCTAAATCCC 76281 33 100.0 35 ................................. ATCTGCCCCCATACCAAATGCTTGCATTGTATCAG 76213 33 100.0 34 ................................. GGTGCAGAGGCTTATAAGCATTGGGCGATTTTGC 76146 32 78.8 0 ..TG..........A.....G.A.-...A.... | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 97.6 34 GTCTCTCTCTGTATGGAGAGAGTGGATTGAAAT # Left flank : TTGGTATTTAGAGGATTTTAAAAATAAATATGGTCCTGTTCAATTGATTTTCAAATCAAATAATATCGAGCTATTAAAGCGGACCATAGCGGAGGATATGGCGATTGGTATTTTTATTGAATACAGCATGCTAAATGATCCGTTCGTACAAAATGGTGATATTGCTATTGTGCCATTAGTCGACCATGAGCCGAAGCACATTACACTCGGCTGGGCAATCTCGGAGCATAAGCACTTTTCCCTTGCGCAAAAGGAATTTATTAAACATCTATTGCATGAATATCATAATTTAAATGTTTAAGAAAGATGACATATACCAGATAATAATTAAGAGTATCAAACTGCGCGAACCTCAAGTGTCCATAAATTTGCTAGGAGGTTCGCGTAAAAAACAGAATATGTTTTATCGTTATTATGGAAGTTTTTACTTCTATTTGAATTGGGATATTTGTTAATATCTATATATAGATATTATAATAGATGATAATCTATATATTGCG # Right flank : ACGCTGTTTTTGTATGGATTCGAAAGTAGCCATGAATTAAATTTTAGTGAAGTAAAAAAAGGGCGGGGGATTAACTAAAAAAACAATCACCTAAATATGAACAATTAACGGCAAGTGCGAATGTGAAGCAAACATGATTTACTAGGGGGATTCGCACCAGAAATGAAAGTGATTTTCCATTAAAATGGGGAGGGTTTTAGGTAAATATAACCCTGAAGATTTATTTTTTAGTGAAAAAGAGTGATAAATATTATTTTTATATGATTTTTCACAGTTTCTCTCTTCATAGAGAGAATGGATTGAAATTTCTAACGTTCCAGGTAGGAAACCTTGCTTCAAGTTTCTCTCTTCATAGAGAGAATGGATTGAAATCGATTACGTCATACCCTGCTAATTTATAGCCCATGTTTCTCTCTTCATAGAGAGAATGGATTGAAATCATGACCCTCTCTAAATCTTGAGATGTTAGAAGTTGTTTCTCTCTTCATAGAGAGAATGGA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCTCTGTATGGAGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 83931-82437 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG964406.1 Bacillus ndiopicus isolate FF3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================================================================================================================================================================================================== ================== 83930 33 97.0 35 ...........T..................... TTTTCCGCTGCAATCCAACATAAAAAAATGCATGT 83862 33 100.0 34 ................................. TATGCTACACATACGCAGAAGTTGTACAAAATCT 83795 33 100.0 34 ................................. AAAATGGTCAATCTATTGGCCATGCATGGAATTT 83728 33 100.0 34 ................................. TCCGTTAATAGGGTATGGGTTAACGGTTTCTTGT 83661 33 100.0 35 ................................. CAATGTTACACTAGTGTTTGTATTATTTAGAACTT 83593 33 100.0 34 ................................. ACGCCCGGCTGCCTCAGCAAAATATACACGTGAC 83526 33 100.0 38 ................................. GGCATAAGTTTCTCCCCTTACAATTGATTCATCCATTC 83455 33 100.0 33 ................................. CATCAGGTTACTTGCGCCGCGAGTCACTTCGTT 83389 33 100.0 35 ................................. ACCAGTTGCGTGAGCTAGATAATGATGCGGAAAAC 83321 33 97.0 33 ...........T..................... CTTTAGGTAAAGGTTATATGATAGACACATTAG 83255 33 100.0 35 ................................. GGGGATTCGACCATTAGTTGTATAACCCCATAATA 83187 33 97.0 33 ...........T..................... CTAACTTTCGCGATAAAGCAATTGTTGATTTTT 83121 33 97.0 33 ...........T..................... TCAATGATTTGAACCATTTCAGACACAAATTGT 83055 33 84.8 211 ......T....T........T....C......A GTAAAAAAGACAGGTAGTGTAAAACCATATTTACATGTATGATTAATGGTTAGTGCGAATGTGAAGCAAACATGATTTACTAAGGGGATTCGCACCAGAATTTAAAGTGATTTCTCATTAAAATGGGGATGATTTTAGGTAAATATAACCTTGAAGATTTATTTTTTAGTGAAAAAGAGTGATAAATATTATTTTTATATGATTTTTCACA GT,GC,AA [83021,83028,83031] 82805 33 84.8 35 ..T.......T...A..A...A........... TTATTTGCCGTAGTTGAAGTTGAACTTTTATTAAC 82737 33 84.8 33 ..T.......T...A..A...A........... TTGTTGAAGGTGTAACTACCCTGCCATACTTCG 82671 33 84.8 33 ..T.......T...A..A...A........... CTTTAGCTCCCAGATACTTATGAAGGTCAGTTC 82605 33 87.9 34 ..T.......T...A......A........... ATCTCATGCATCATGCGGTACAGCATTTTATCAC 82538 33 84.8 36 ..T.......T...A.....TA........... ACATTCTGTGGAGGGAAAGGAGATGCTGCTAATGAC 82469 33 75.8 0 ..T.......T...A......A.....A.T.TA | ========== ====== ====== ====== ================================= =================================================================================================================================================================================================================== ================== 20 33 93.8 44 GTCTCTCTCTGCATGGAGAGAGTGGATTGAAAT # Left flank : ATTGCGCCTAAACCAGATGATCCAAAGCCAATTTGGTTTAATATTTTAGTACCAAACATCGCAGAAACCTATGAAAAAGCAATGAAAGCTGGCTGTAAAGAAGTACAAGCAGTAACAGAAATGTCTGACTTCGGTATATCAAATGCCATGTTTAGCGATCAATTCGGCTATCTTTGGATGCTACATGAGCTGCACAGAGTAGTCAGCTTTGAAGAACGTGTACAAATGTTAGGAGAAGAAGGAAGAAATAATCACTAACAAAAACTTAGCAAGCCAAAAAGACAATTTTCATGTCACATATAAATGATTTGCTAAAAAAATTTATGCTAATCACAATCGTAGCTGCGCGAACCTCTAGTGCCCATAAATATGCAGGGAGGTTCGCGTAAAAAACAATAGGATTCCATCCATTTTTATGTAATAATTTACTTGTAGCTAGCTCGTATTATAAATATTGAACTATATATAGGCGGTAAAATAAAAAACAATCTATATGTTGC # Right flank : AATACAAAATAAAATGGTTGTCGAGAAAGTAGGATTATACCTAATTTCCTGACAGCCATTTGCGTTTTTATTGTGATTTTTTGTCTTTTCAGCATTGCCCTCTCTTTTTTGATTAGCCACGATAGCTGTCTTGCCATGCTAGTAGCTTGCGTTCAAGTAGACGCACAAAGGAGTCTGTTAGCTTTCCAGCGATAGCAAATACACAGATGCCTACAAAGACGATATCTGTTCGCATATAAGCACGTGCATCTTGAATTAAATAGCCAATTCCTTTATCAGCGCCCATTAATTCTGCGACAACTAAGCATAGCCAAGAGGCGCTTAATGAAAGGCGCACACCTGATAGCACATTGGGCATTGCTCCTGGTAAAATAACCTTTGAAATTTGCTTAAAGCGGCTAAACTCTAAAATACGTGCTACATCAAATAGTTTAGAGTCAACATTGCGCACACCTAAAAAGGCATTGACATACATAGGGAAAAAAGAACCCATCGAAATT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCTCTGCATGGAGAGAGTGGATTGAAAT # Alternate repeat : GTCTCTCTCTGTATGGAGAGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //