Array 1 29111-29799 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZV010000022.1 Pseudomonas aeruginosa strain PA17-16 NODE_22_length_91644_cov_50.044765, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29111 28 100.0 32 ............................ AAGGTATTGGGCGTGACCACAGACGAACTCTT 29171 28 100.0 33 ............................ GTATGCGGAAGAAAAATCCGGCGAGCCCTTCGA 29232 28 100.0 32 ............................ GTTAACGGAGGTCCAAACCTCCTGGCCGGGGA 29292 28 100.0 32 ............................ TTATGGATCAGGTTTTCAGCGTCGAATATTGA 29352 28 100.0 32 ............................ AGCAGGCCGCCAAGTGACCAGACGTCGAGCAA 29412 28 100.0 32 ............................ TTCTGAGCCTGCGCCAGGATAGAGATGTAGTC 29472 28 96.4 32 .........................A.. AGATCGCGGCGTGGGGTGGTCGGCTTCCACGA 29532 28 96.4 32 .........................A.. CTTTTCGTTGGAGATCGTCGACCAGACCTTTT 29592 28 96.4 32 .........................A.. ACCTCCGGCCGCTCCGCCTCTGCCTGCTCGGC 29652 28 96.4 32 .........................A.. AAATGGATCCGGTCCCTTCATGGAAAAACGGT 29712 28 92.9 32 ...A.....................A.. TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 29772 28 96.4 0 .........................A.. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.9 32 GTTCACTGCCGTGTAGGCAGCTAAGGAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCTGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGTTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGCGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGGAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 39311-38323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZV010000022.1 Pseudomonas aeruginosa strain PA17-16 NODE_22_length_91644_cov_50.044765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 39310 28 100.0 32 ............................ AGCATGGCGTTGTGCGGCAAGAACAGGAACTG 39250 28 100.0 32 ............................ AAGATCAGTGGTTCGACTGCGTGCAGATGGTT 39190 28 100.0 32 ............................ TCAAGCACCAGTCCGCGCACGCTGCGCACACC 39130 28 100.0 32 ............................ TTTGACTGGACGACAAGGTTGAACCACGGCCT 39070 28 100.0 32 ............................ TGCGCGAGTCCAAAGGCGATCCTGTTGGTAGC 39010 28 100.0 32 ............................ TTTGCCAGAGCAAGGGCGTGCTCACGGCTGTT 38950 28 100.0 32 ............................ ACCCAGCAGCAGGCATTCATCCAGGCCGTGAA 38890 28 100.0 32 ............................ AGGTCTCAGCAGAGGCTAAAACGGCCGGCATC 38830 28 100.0 32 ............................ ACGCGATGGCGGAGACGGCCTGCTTTCAAGCT 38770 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 38710 28 100.0 32 ............................ TGGGTGCGTCCACGCAGCAACTGGAAGATCTC 38650 28 100.0 32 ............................ ACGTCTGAAACGACTTCACCGGGACGAAGCGG 38590 28 100.0 32 ............................ CCACCATGTCGGCGGTGATCGTCACCGGCACC 38530 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 38470 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 38410 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 38350 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //