Array 1 177875-177561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAAPJ010000003.1 Corallococcus sp. c25j21 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 177874 31 83.9 39 ..A..........G....G....CC...... GCGGGTTGCTTGGGCTCCGGGAGATTCAGGCGGACTGGG T,C,GT [177845,177865,177868] 177800 31 100.0 39 ............................... GCGGGTTGCACAGGCCAGGGGAGACTCACATCGCGCGGC 177730 31 87.1 39 .A...................T...CT.... GTAGTTTGCTCGAGCCACGGGAGACTCACATGGCGCGGC 177660 31 100.0 38 ............................... GCGGGTTGCACGGGCCAGGGGAGACCACGTGGCGCGGC 177591 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 5 31 94.2 39 CGGGCCGGGCACCACGAGACGCCTGAGCTGA # Left flank : TGCAGGCGCTGGTGAGACACGCGCCGGCGTCGGGGACCGACAGCGGTTGCGTAGGACGGCCGCCGCAGCCCGCGAACGCGAGCAGCAGACCCCAGAGGGCGGGGTTCGAGCGGAGACGGAGGGGGAAGGGGAGTCGCGACGAGGGTGACATCGGGGCGGCAACCTATCACCGCGTTTCATCGCGGACCGCGCGGACAATCTCGAAGTGTTTGACGACGCAGCGCGACTCGCTCGCTGCGTCGTACTTGGGGGCCGCGAAGCGTCCGGCCCGCGAAGTGGCGCGGGAAACCGAGTCGTCGCGGCTCGTCGTGAGGTGGATGCAGTGGAAGGCCGGTGGAGTCAGGGGTCGCTCACGCGGAGTGCGCGGGCCGGGCCTCGCGATGCTCGCTCCGCGTGGGTTGGCGGAATGCCACACACGGCTCACGTGAAGAGGAACGGTGTGTCCACGGGTCGCTTGCCTGGGCTGGGGCTTGGGCCACCGGAGGTTCAGGCCGCGTGGG # Right flank : ATGGGAGGCTGGGGCCCAATGCCGCTCACGGGGTGGCTGGGCGGACCGCGGGCCCCGTCGCTGCTCGCGGCGTGCGACCGATGCGGTGCCTCATCCGACCGCCCAGACCAGGAAGCCCCGCTCCCATGCCCACGCGCCCCGACCGGCCACGGGAGAGGGGGCGCCGTTCGGCGGGCTTCCGCGACCGCTCGTCCCCGAGGCGTGCCGCCGTGCCGCCGGGCGTGCGCATGCTGTCTTCATACCGGGCGCTGACGCGCTCGCGAGGTGCCGCCACCATGACCCCGTCCCTTCCGCTCTCCCCACTTCCTCCTCCGGCCACCGCGGCCGCGGCCCCGTCCCGTCCGTGGCTGCCCTGGGTGCGCGCGCCGCGCCAGATGCTGGGCGCGTCGCTGGCGCTGGGGGTGTTCGCGGAGGTCCTGCTGGACCGGGCGCGTTGGGGCCTGGGCTTCCCCGTGCTGGTCGCGGCCCTGGTCGGCGCGCTCGCGTGGCTGGGCGGGCGT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGGCCGGGCACCACGAGACGCCTGAGCTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 465872-469813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAAPJ010000007.1 Corallococcus sp. c25j21 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 465872 37 100.0 35 ..................................... CTCGACCAGGGCGCGGCGCTGGCGAGCGCGGCGGT 465944 37 100.0 34 ..................................... AGCGTCACAGGGTCGAGCTTCGGCAACGTGTCAC 466015 37 100.0 37 ..................................... GCCTTCGCAGGTTGTTCGCTGGGCGCCGTGGCCTCCA 466089 37 100.0 35 ..................................... TCCCCGCCTCCAGTCGCGGTCTGCACCTGAAACAA 466161 37 100.0 33 ..................................... GTAAGACCTACCCTGTGGGCCTTGAGCAGGAGG 466231 37 100.0 35 ..................................... CACAAGCAGGTTCGTCCCCTCAGATGCCTTTATGG 466303 37 100.0 34 ..................................... TCCTTCCGCCTGCGCTTGCTGCGGCGATTTTCTT 466374 37 100.0 36 ..................................... CGAGCGGGACGCGGAGCCGGACGATACGCCTTATCA 466447 37 100.0 36 ..................................... AAGACAAGACTATGGGAAAGGCTGAATTAGACAAAT 466520 37 100.0 37 ..................................... TTCAGGGCCGGGAAGTTCTTGAGGAATCGCTTCCGGA 466594 37 100.0 44 ..................................... ATCTTGGGGCCCAAGAGGACCGTGGCCATCCAGCCGGGCTTCTT 466675 37 100.0 38 ..................................... ATCTTGGGGCAGGAACCCGCGTACCTGGAAATGCGCCG 466750 37 100.0 33 ..................................... GTGAGAGGGCACCACTGCCGTCTGCCGGATGAC 466820 37 100.0 36 ..................................... TGCTCCTGGATGTCGCGCAGGAGCGAGCTACGCTCC 466893 37 97.3 36 ..........C.......................... TAGGCACCAGCGGGGCTTGTTTTGGGGTCGCCATGG 466966 37 100.0 33 ..................................... CTCACCGTCACGCTCAGCTGCGCAACGCCGTAG 467036 37 100.0 39 ..................................... ATGGTGCAGCACTGGCCGAACTTGGTCGCGAAACTGGAG 467112 37 100.0 34 ..................................... CAGAGGGAGAGGAGGCGCCCCTGATCAGCACTGC 467183 37 100.0 39 ..................................... TCGGCGCCCACGCCCCACATCGCCGAGCCGGGCCACGGC 467259 37 100.0 37 ..................................... AATTCGCCACGCCACGTCTCTAGGCAACACGTCGTCC 467333 37 97.3 35 ..........C.......................... TTATGCCTGCCCGTCAACTTTCTGACTGTTATTTT 467405 37 100.0 37 ..................................... GGCGTGAACGTCCCGGGGTTCGAGCGCGCTCCATATG 467479 37 100.0 35 ..................................... ATCGCTTCGCGCAGGGCCGCGATGGCTTCCAGCAC 467551 37 100.0 34 ..................................... ATGGCGCCATCAACACCCAGGCCCTGCTCGATGA 467622 37 97.3 33 .......T............................. CCCCTCCCGGGGCCGCAGAGCGCACGGCTCATG 467692 37 100.0 38 ..................................... TGGGGGTTCATCTTGTCCCCGCCACTCCACCGATGCGT 467767 37 100.0 31 ..................................... TAGTAACCCTTGAATCCCCGCGCCCTCATCA 467835 37 100.0 35 ..................................... TCCGCTGAGACCCGAGGGCGTTCGGGCACGGCGGG 467907 37 100.0 32 ..................................... ATGGCTCACCTGGAGAAAGAGGACGGCCCGTA 467976 37 100.0 33 ..................................... GCGGTAACGGTGGGACACTCACGCCAGCTGGTG 468046 37 100.0 34 ..................................... CGTGATCTCGCGCGCGCCGAGGGGCGCGCGCACT 468117 37 100.0 33 ..................................... AGCTTCGATTTTCGCGATGGCCTGCTGGATTTT 468187 37 100.0 34 ..................................... CCCAAGGGCGTGAGCAGGAACCCGGGCGGGCGCC 468258 37 100.0 36 ..................................... TTCGGCACCGAGACGAAGGGCGCGAAGGCAAGGCTT 468331 37 100.0 35 ..................................... CAGCTCTGCAAGGCCAGCGACAGGTCGCTGCTCAC 468403 37 100.0 34 ..................................... ATCAAGTCGTCAATGCCTATCTATGGCGACTCTC 468474 37 100.0 34 ..................................... CGCATCGCCCGGCTTGGCTACTACATCGTCCAGA 468545 37 97.3 32 ..................A.................. ACAGCTGCGGACGGACCTGGTCGCGATGCTCC 468614 37 100.0 35 ..................................... ACCTGACACTTGTAGGTGATCTTCAGCGTCTTGCC 468686 37 100.0 35 ..................................... CTCCGGTGATCGTCCAGGTGATCGCCGTTGGATTC 468758 37 100.0 35 ..................................... CCGAGTTGACACCGCACCTCGGCAAGGCGCTGTCG 468830 37 100.0 40 ..................................... AAGATGCGTACATGGCGCACCCCGGCCCCTGCGGCATCGT 468907 37 100.0 35 ..................................... CAGGCCACGATGAACGCGAAGATGAGCATCACCAC 468979 37 100.0 35 ..................................... TCATGCTCGCCACTGTCGTCATAGACTGCGTGCAT 469051 37 100.0 35 ..................................... ACCAGCAGCCGCCAGGAGTTTTCCCCCTCCACCTC 469123 37 100.0 36 ..................................... TCGCGGACGAGGCGATCCTCGACGCGCCGGGTTACT 469196 37 100.0 36 ..................................... GAGAAGCCGGACGCTCCGCGTGACGCGCTTGCTGCC 469269 37 100.0 35 ..................................... CTGTCTTACTGGTGGATCGGCGACCGCGCTCTCGT 469341 37 100.0 35 ..................................... TGGGTGGACTTCGGCTGGCGCGGCCCCGCGGCAGG 469413 37 100.0 37 ..................................... CGCCGGTATGTCGTGCTCGCGCAGCACCCGGGCTCCG 469487 36 97.3 39 ..................-.................. GACGTGCCGCGCGGAGATAGCAGCGTCGAGTGCGGTACA 469562 37 91.9 34 .........T..C.T...................... TGGCCCCTCTTCGGCGTGCCCTCCTCGGACGCGT 469633 37 97.3 35 .................A................... TCAAGTACGGCGTCTCGTTTACGAACGCGGAGCAG 469705 36 86.5 36 ....T..........-.....TG......A....... GGCGTTCGGTCTTTGCGTGTCGCAGCCATAGGCAAG 469777 37 81.1 0 .......T....AAT......C...AA.......... | ========== ====== ====== ====== ===================================== ============================================ ================== 55 37 99.0 35 GTCGCTCCGCTCTCCGGGGCGGAGCGTGGGTTGAAAC # Left flank : CCCGCCCTTCAGGATGAGGTGAGGCGATGCTGGTGCTGGTCTGTTACGACGTGGCGAACGACGACGCAGCGGGGGCCCGGCGGTTGAGGAGGATCGCGGAGGCGTGCAAGGACCGCGGGGTGCGGGTGCAGTATTCGTTGTTCGAGTGCCGCGTCGGGAAGCGTGAGTGGGTGGCTTTGCGCCAGCGGTTGTTGGATGAGGCGGACCTGGCGAAGGACAGCCTGCGTTTCTATTTTCTACACGCGGATGAAGAGACCCGATGTGAGCACCACGGGGTTCGACCCCCGATGGATCCCACAGGCACCCTCATCGTTTGAGGGGCCGCGCGAACCCTTCCCAGTGGAGGGCTGCCCTGAGGTTCGCGCTCGGGAAACTCCGGGGAAGAACAGGGGGTTGTTGGGAGGGGATGGCTTCGCGAGGGAGGTGGAATGGTGCCGATGGAGGGGTTCGCGGAAAGCTTCGAATTTTCTTTGGAAACTTCATACGTTAGAGCCAGTAGG # Right flank : CTCTCGACGATTTTGAATCTAGCCGGTCAGCGTGGATTCACCTGAGTCCCTGCGGTATGCGAGCGCGGAACGAATCAAATGGGTCATCACCGCGGACGGCCAGCTGAGAGTCATTCCACATACATGGCAGGGGGTTGAGCTTTCTCATGCGGTCGCGAGCGGAGGTCGCCCCGTGTGGGCTGTCGGTGAAGCAGAACTCTCGATTCACGGCACCACTCGCTTCGGAATCCAGTTGACGTCTCGCAGCGGCCATTATCTGAACGGGGCTTCCCAGGCCGCGAGCGAGAGTGTCCTGGAGCTCGGTCGGCGGGCATTTGCCAGATTTGGAATCACGTTCGCTCCGTGACGGTAACTATGGAAACGAAGACTCCTCTTCTGCAAACCGTCCTGAAGTGGCCGCTCCCGCAGGTGCGAGCCTGGCTCGACGGGCTTTCTATCGGCGAGCCAGTGGGCGGCGAGAACTTCAATTGGGATGGATTCGCCTTCACCGCCGCAGCCCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCGCTCTCCGGGGCGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.60,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //