Array 1 762-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYOD01000036.1 Listeria monocytogenes strain CDPHFDLB-F15M04208-E044 F15M04208-E044_Contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 761 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 696 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 631 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 567 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 501 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 437 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 374 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 310 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 245 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 181 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 115 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [91] 49 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6264-8281 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYOD01000049.1 Listeria monocytogenes strain CDPHFDLB-F15M04208-E044 F15M04208-E044_Contig_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6264 36 100.0 30 .................................... GTATTGACGAATACTACCGTAGAAGTATTC 6330 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 6396 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 6462 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 6528 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 6594 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 6661 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 6727 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 6793 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 6859 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 6925 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 6991 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 7057 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 7123 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 7189 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 7255 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 7321 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 7387 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 7453 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 7519 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 7585 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 7651 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 7717 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 7784 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 7850 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 7916 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 7982 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 8048 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 8114 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 8180 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 8246 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //