Array 1 2150-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCD01000005.1 Listeria monocytogenes strain ICDC_LM0422 LM0422Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2149 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 2083 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 2017 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 1951 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 1885 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 1819 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 1753 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 1687 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 1620 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 1554 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 1488 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 1422 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 1356 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 1290 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 1224 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 1158 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 1092 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 1026 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 960 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 894 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 828 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 762 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 696 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 630 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 564 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 498 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 432 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 366 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 300 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 234 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 168 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 102 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 5680-5377 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCD01000014.1 Listeria monocytogenes strain ICDC_LM0422 LM0422Scaffold13_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5679 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5613 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5547 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5481 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5415 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5380,5383,5388] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AGCTATGTTATTTTGAATGCTACCAAAACGTCTAAACTTGGAATATAACTTAGGTCTT # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //