Array 1 883709-886605 **** Predicted by CRISPRDetect 2.4 *** >NC_011891.1 Anaeromyxobacter dehalogenans 2CP-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 883709 30 96.7 31 .............................C TGGACCGCGACATGCGCGAGGGGCTCGAGCG 883770 30 96.7 31 .............................C ATGCCGAGTGCCGCTCGCCGGAGCGCCGGTC 883831 30 93.3 31 ............................TC CGGGTTTGGGGGCTAAGTGAGGCCGGGCCTT 883892 30 96.7 31 .............................C CGTACCAGGCCCTGGTGGAGCCGCTCGACGT 883953 30 100.0 31 .............................. GGCGGGCCGGGCCGACAAAGGATGACGAGGC 884014 30 96.7 31 .............................C CTCGGCCCCACGCGGATCGCTGCTGGTGCGG 884075 30 96.7 31 .............................C TCAGGATTGCCAGGAAGCGTGCCGGACTAAG 884136 30 100.0 31 .............................. AGCGAATCACGGGGTGGCGCCCGGCACGACG 884197 30 96.7 31 .............................C CAGCCGACGTGCCGGGGATGCCGAACATTCC 884258 30 96.7 31 .............................C GCCCGGTCGCCGTGGTAGACGCGGATGAGGA 884319 30 100.0 31 .............................. GTCGTCGGTTCGCACGCCGCTCTCCATGTCG 884380 30 96.7 31 .............................T CTGCAACGTCCAGCCCGCTGCCGCCGGGGCT 884441 30 96.7 31 .............................T TCACGGGCGGGATCGACGTGACCGGGGACAT 884502 30 100.0 31 .............................. TCGGCGAGCCGCCGCCGCCGGTGAACGCTCC 884563 30 93.3 31 ............................GC GGAGCGCGCGGAGGCGGCCGAGCCGGCCCTG 884624 30 100.0 31 .............................. GGACCGAGTCGCGCGCCAAGTCCGTTGTCAT 884685 30 96.7 31 ............................T. CGGCCGCAAAACTGACAGGGCGCGGCGGTCA 884746 30 100.0 31 .............................. TGATCGCGCCGGTCGGGAAGAAGCGCCCGAC 884807 30 96.7 31 .............................C CGGCCTCGTCCACGATCGCGAGGTCGGTCCC 884868 30 96.7 31 .............................T GGCAGATCGATAACGCCCGCTCCGCCGACTG 884929 30 100.0 31 .............................. GAAGATCGCGGCGACCGCGTAACAGAGAGAG 884990 30 96.7 31 .............................T CCTTCGCCAGCTCGGTGAGGTCGGCGCCGGC 885051 30 100.0 31 .............................. CGTACCTGGGCGTGCTCGGGCGGCTCTACTC 885112 30 100.0 31 .............................. GTGGACGGATCATCACTGATGGGGCGGGCGG 885173 30 100.0 31 .............................. CTCGCCTTGTTCGGGAACCGCAGGTCGAGCC 885234 30 96.7 31 .............................C GGAATCAGCTTCCGGGAGTCCTCGTGCTTCC 885295 30 100.0 31 .............................. CGGAGAGGCCGCCCTCTACGACCTGCAGGGC 885356 30 96.7 31 .............................T TGGGCGGCCCGCGCGCGCACCGACTCGTCCA 885417 30 96.7 31 .............................C GGAGCGCGACCCGGGCCTCGCTCGGCTGGTA 885478 30 100.0 31 .............................. AGGAGCCGCTCGGCGCGGAAGGCGACAGAGC 885539 30 100.0 31 .............................. CTCGGTAGAGCGCAGAGGCCTGCTTCGCGCT 885600 30 96.7 31 .............................C CGTCCGCCACCGGCAAGGTCGTCCTGAGCGG 885661 30 96.7 31 .............................A GCGCCGGGGTTTTCAAGCGGCCACCCCCTGC 885722 30 100.0 31 .............................. CCGTCTGGAACGGGAGGTACGGGATCGCCGT 885783 30 100.0 31 .............................. GGCAGAGCCACGGCACCTTGCGCAGCCCGCC 885844 30 100.0 31 .............................. CCTGGAACGTCTCGGCCGGCTCGACGTGGAA 885905 30 96.7 31 .............................T GAACTGGGGTCCCGAGCAGAAGCACGGGGTC 885966 30 96.7 31 .............................T CCCAGACGATCTGGCGCATCGCGGTGGCACC 886027 30 100.0 31 .............................. GCCCGTACACGTCCGGCCCGGCCAGCGCCGC 886088 30 100.0 31 .............................. GTGAGCCCGGCCGCGAGTATCACCGTGGGCG 886149 30 100.0 31 .............................. GCGTCTTCCCGCACCCCGGCATGCCCCACAC 886210 30 96.7 31 .............................T TCGACTCCGCCACCGGCTGGACGCTGAACGC 886271 30 100.0 31 .............................. GGAACCAGGCCACCAGCCCGGGTGGCACGGT 886332 30 100.0 31 .............................. ATCCGTGGCGTGCTTCGGGCGCTGCGCCGGG 886393 30 96.7 31 .............................C CCGGAAAGGTTCCAACCATGTCCGATTGCGG 886454 30 96.7 31 .............................C GTCGCTTCATCCCCACCGACCGCCAGGCGCT 886515 30 100.0 31 .............................. CGCGTCAGCCGTAGGAACGTCCGCAGTGACC 886576 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 48 30 98.1 31 GGCTTCCCCGCGTGCGCGGGGATCGACCCG # Left flank : GATCCCCGCAAGCCACTCGAGCGCACGGCAAGGCGCGCCGCGGGTCGTCTCCTGCAGCAGAAGGACGTCATCCCCGAGATGATCGACCGCATCAAGGAGATGTTCGATGCCGATGACGGTCATCGTGACCCGTGACGTTCCGGATCGTTTTCGAGGCTTCCTCGCGTCGGTCGCGCTGGAGATCGCGCCCGGCGTCTATACGGCGCCGGACATGACTGCATCGGTGCGAGAGCGCGCGTGGACCGTTCTTGAGGACTGGCACCAGCATGCGCGCCAGGGCGCCGTCGTGATGACTTGGCCCGACGGCGCGGCGCCAGGCGGGCAGCGCGTGCTCGTTCTAGGGGACGCGCCGAGGGAGTTGTGGGTTGCAGACGGCCTGGTTCTGGCGCGCCGCGACGTTCCGACCGACTCCGGTGCGCCGTCGATCGCTCCGTGACAACTGAATAGGCGACCCAGGCTCGCAGGGAGCGGGCCTGGCTGCTATACCCAACTGTGTAAGA # Right flank : CGGGTCCTCCACGTCGATCTTCGTGGCCGCGAGGTGTCAAACGACAGGAGGAATTGACCCCCAAACGACAGAACTTCTGACCCCCTCCGCCTCGGGGTTCAGTTCGCCTTCTCGGCCCTGCCGAGCAGGCCCGCCTTGCGCTTCTGCTTCAGCCTGTAGCTCTCGCCCTGGATCATCAGCGTGAAGCTGTGGTGCAGGAGCCGGTCGAGGATCGCGGCGGCGATGAGCTGGAAGAACAGGTGCGCACTGCGCTTCTCGAACGGCAGGTACCCCAGCTCGTCCACGACGAGCAGCTTGGGCTTCGCGTAGAACGCGAGCCGCTCCGCGAGCTGGCCCTCGGTCTCGGCCTTCGAGAGCGCGCCCAGCAACGCCGTCGCGCTCGTGAAGAGCACGGTGTAGCCGGCTTCGACTGCGGCGCGCCCGAGCCCGATGGCGAGGTGCGTCTTGCCGACGCCGGGCGGGCCGAACACGAGCACGTTCTCCGCGTTCGCGACGTACCG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTTCCCCGCGTGCGCGGGGATCGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 888746-892492 **** Predicted by CRISPRDetect 2.4 *** >NC_011891.1 Anaeromyxobacter dehalogenans 2CP-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 888746 30 96.7 31 .............................T TGTACGGGCCGTCGATGTCCGTCCCCAACGT 888807 30 96.7 31 .............................C TCCCGGTGATGAGCGTCGCGGCGCGGAACAG 888868 30 100.0 31 .............................. GATCGCCGAAGTTCCAGGCGGTGATCCGTAG 888929 30 93.3 31 ............................GC GGGTGCCGGGCCGCGAGAACGCCCTGCACGT 888990 30 100.0 31 .............................. GAAGGAGAGAGAGATGGCGACGGATCGTGAA 889051 30 96.7 31 .............................C GCTTCCGGATCGAGCACACGCTTCGCCGCCT 889112 30 96.7 31 .............................C GCGAGTCCGGCAGCATCCTCGGCATCTACCG 889173 30 96.7 31 .............................T GCGGGGCGGCCACCTCGATCGCAACGTCTGG 889234 30 96.7 31 .............................T CGCTCGACCTCGACGGCGTGGTCACGCTGAA 889295 30 96.7 31 .............................C CCGGGCTCTTCGGCATGTCGCCGATCTGGGG 889356 30 96.7 31 .............................T TGGCATCAGCAGTCGGTGGACATCGACGCTG 889417 30 96.7 31 .............................T GGCGTCCGAGGCGCTTCGTCCCACCGGCCCG 889478 30 96.7 31 ............................G. AGAGGGAGACCTTCACGGCGGCGCCGCGCCG 889539 30 100.0 31 .............................. CGCAGGAAGGCCAGCGGTGGGCGCAGGCGAA 889600 30 96.7 31 .............................C GGTGGACGAGCCGCCGGTCGCGGGTCCAGAG 889661 30 100.0 31 .............................. GGCTCGAGGACCTCGAGCAGCTCGCGCGAGA 889722 30 100.0 31 .............................. CGGGCAGGTAGGCCCACCCGCACTCGGCGCC 889783 30 96.7 31 .............................A AGCGGGTTCGGAACACACGGTCAGCGCTGAT 889844 30 100.0 31 .............................. AAGAGGCGCTCTCTCCCGCGCAGGCGCGCGA 889905 30 100.0 31 .............................. TCGCCCACGAGAAGCGCCAGGAGGAGCTCAA 889966 30 93.3 31 ............................GT TGTCCGCAGCCGGTCTGCTCCGCTACGTCGG 890027 30 100.0 31 .............................. ATCTGGAGGGCCACGCGATCACGATCCGGCT 890088 30 96.7 31 .............................T CCTCCCGGTCGCCAGCGAACAGGTACGGACC 890149 30 100.0 31 .............................. AGTAGACGCGCGATGCGGTGGAGCGGCAGCG 890210 30 100.0 31 .............................. TGTCGATGATGGAGGCCCGGCGAACGCTGGG 890271 30 96.7 31 .............................A CCTACTCCGTGATCAAGGCGCTGTTCCGCGA 890332 30 96.7 31 .............................T CGTCGGGGCTCCGGCCGGCCGGCAGCGGGCG 890393 30 100.0 31 .............................. CTCGGTAGAGCGCAGAGGCCTGCTTCGCGCT 890454 30 100.0 31 .............................. GCGCACGTCCCCCACCACCACCGAGAAGGAG 890515 30 100.0 31 .............................. AAGGCGCATCCCGCGATCTCGGTCGTCAGAG 890576 30 100.0 31 .............................. TGCACACCACCGCGGCGGCCGCCCACGCGCC 890637 30 96.7 31 .............................C GTGGAGGCCACCGTCGCCGCCGTCACGTCCC 890698 30 96.7 31 .............................C GCGCCGAGCCCGGGTCATTCCCCGACCACTG 890759 30 100.0 31 .............................. GGGTGAACCTGCTCACCGCGATGACGCACAT 890820 30 96.7 31 .............................T CCGCGGAGCCAGGGCCCTGGACGACGCTGCC 890881 30 100.0 31 .............................. GGTCCCACATCCGGAAGGCGCTGTCCGACGC 890942 30 96.7 31 .............................C CGTCGAGCAGGTTGCGGAGGTCGGCGGTCGT 891003 30 96.7 31 .............................C GCCTCGACCACACCAGGCCGAAGACGCCGGC 891064 30 100.0 31 .............................. TCGTGGACGGGCGTGACCGGGAGCGGATACC 891125 30 100.0 31 .............................. GCCGGGCCGGGTCCTCCGCGCCGAAGTAGGC 891186 30 96.7 31 .............................A GCAGCCCGCGGCCGCCCGTCGCGAGGTGGTG 891247 30 96.7 31 .............................T GGCGCAGGTAGGACGGCAGCGTGGCGCTCGG 891308 30 96.7 31 .............................T CGACAAGGCGCTGCTCGCGATCTTCGCCGAG 891369 30 96.7 31 .............................A GCGCGCCTCCACCCGGCGGCGTCCACCGGGG 891430 30 100.0 31 .............................. GCGTGGACCCGAGCCGGCGCGGCTTCCTGTC 891491 30 96.7 31 .........................G.... AGTACGAGGACGCCAACCTCGTCGCAGCCAA 891552 30 96.7 31 .............................C CGTCCGCCACCGGCAAGGTCGTCCTGAGCGG 891613 30 96.7 31 .............................T TCCTGACGGCGACGCTGGACGTCGTGGACGA 891674 30 96.7 31 .............................T CAGCGTCTCGCCGACGACGCCCGCCGCGTCG 891735 30 93.3 31 ............................GT CGGCCGTGAAGCGCTTCCGCTCGCCCTGGCG 891796 30 96.7 31 .............................T TGTACGGGCCGTCGATGTCCGTCCCCAACGA 891857 30 96.7 31 .............................T CCTCGTGGCGTTCGGCCCGGACCCGGACGGT 891918 30 96.7 31 .............................C CGAGGTCAATCGTCTCGTCGCTGAACATCTT 891979 30 96.7 31 .............................A TCAGCGCCACGTTCGCGAGGACCTGGACGGC 892040 30 96.7 31 .............................A TGCGCGAGAGGAGCGAGCCGCGGATGAGCGT 892101 30 100.0 31 .............................. AGGTCCAGCGTGTCCTGGGCCGGCGCGGAAC 892162 30 90.0 31 ..A......................G...T TCTTCGCCCCGGTGGTCGAGCACGGCTTCAC 892223 30 100.0 31 .............................. GGAGGACGTTCATCAGCACGACCCGGAGCCC 892284 30 93.3 31 ............................GT GGCGCGCGACGCCGGCGCTCGCGCGCGCGTT 892345 30 96.7 31 .............................A CGCGCGACTTGCCGGTGCCCGGCCGGCCGCA 892406 30 90.0 26 ......................C..G.G.. ACGGCGCTCATCGTCGACGCGGACGT C [892430] 892463 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 62 30 97.4 31 GGCTTCCCCGCGTGCGCGGGGATCGACCCG # Left flank : AGTCGATCTGCATCTGCCGGCCCGGCGCGGTCTCGAACCGGACCGTCGCACCGTCGGCGGCGCGCTGCTCGCGCCGGGGTCCGCCACGGCACGCTGCACGGTCCTCACGCTCGCCTCAACGCCGCGCTCACCGAGCATCTGCGCGCCGACCACGGCGTTGCCCTCGGCCTCGCCCTCAAATAGCGCGACTGCTGCTGCTCGCCGGACGTCGGCGAGCCGCTGCTGTGAAGGGTGCCGTTGGAGATCGGCCACCGCGCCGCGCAGGTACCGACGCACCGTGTTGCGAGCCACGCCGAGTTCGCGCGCGATCCGCTTCGCGCCCCAGCCCTTACCCGCGAGGTCACGCATCTGCCTGACCGCCTCCGCCTCGACCATCGGCACCTCCGTCGTCGGGGGTGCCACGAATCCCATCTCGCTGCCCATCTCCGCCTCCTTGCTGAGGGCAGAGGGGGTCAGAAGTTGTGTCGCAAGGGGGTCAGTTATCCTGTCGCTCTACACGA # Right flank : CGCCCCACGTCGAGCCGTTAGCCGGTCCAGCCGGCTTGTCGAGCGACACGTAAACTGACCCCCTGCGAGAGCTCGCGGCGAAGGGCTGGGGAGCGATGCGCATCGCCCGCGATCTGGGACTGGCCCGCAAGACGGTCAGGCGTTACCTGCGAGGCGGCCCTGCCGCCGACGTCCAGGAGCGGCCGACGGCGCGTCGCCTCGACGACTCTGCTCGGGAGGAGGCGCTGGCGCTCTTCGACGGCGAGGCCGACCGCAACGCGGTCGTCGTGGCCGACATGCTCGCGCAACGAGGCGTAGATGCGAGCATCCGGACGGTGCAGCGGGCGTTGGCGCGGCGGACCTCGCCACGGTGCGGTTCGAGACCGCGCCGGGTCGGCAGATGCAGATGTACCTCGGCGAGCGCAAGGTCTGGTCGCCGGCGCGCAGGTCACGGGTGCACTTCCTCGTCGCACTGCTGAGCTACTCGCGGCGGATGTTCGTGAAGGCGTTCCTGCACGAGC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTTCCCCGCGTGCGCGGGGATCGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //