Array 1 2176-134 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAZV01000044.1 Limosilactobacillus fermentum strain DS19_7 DS19_7_44_length_11630_cov_34.413110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2175 29 100.0 32 ............................. AGTAATTTCAACCTCAACCCGACGTTTTCGTT 2114 29 96.6 32 ............................C TCAACCTGAACAATATCTGATTGAAGGTAAGC 2053 29 96.6 32 ............................C GATAACTAAATAAAAGGAGGAAGCAATTATGA 1992 29 96.6 32 ............................C GATAACTAAATAAAAGGAGGAAGCAATTATGA 1931 29 100.0 32 ............................. GAAATGGCATTTGGCTTGAAGTGGGGGAGGTG 1870 29 100.0 32 ............................. ATATAACCGCTTACATGTATAGCTAAAATAAA 1809 29 100.0 32 ............................. TATCGTGACATTTATTCATGGCTTACCAACCA 1748 29 96.6 32 ............................C AGTGCACGATCACGGTTGGCGACGATTCAACT 1687 29 96.6 32 ............................C TTACGAACATCACGGATGACCCCCGTATTTCA 1626 29 96.6 32 ............................C TTGCCCACAGCTTATATACTTCTTTCCAGTGA 1565 29 100.0 32 ............................. GGCAAGACGCGCCAGACGATCGGGGTATCGAA 1504 29 100.0 32 ............................. GTTGACCAAATTGACACGTGGGCAGACACTAG 1443 29 100.0 32 ............................. AAATTCAAGCTTCCATTTGTGGATCCCGGATG 1382 29 96.6 32 ............................C CGCCGTCGCAACTAACCCAATTCAATGGGAGA 1321 29 93.1 32 A...........................C TACACAACCTTATCGACCAAGCCAATGAAGAA 1260 29 96.6 32 ............................C GAAAATCAATCAAACGCTGCTGAACTGAAGGC 1199 29 100.0 32 ............................. TCATTGCTCGCATGTATGGGTTGCCCGCGATC 1138 29 96.6 32 ............................C AAACTGAAATGGTTCAATTCACGATTCACACT 1077 29 96.6 32 ............................C CGTTCCGTCATTGAGAAAACGGGCAACGTAAG 1016 29 100.0 32 ............................. AAGAAGCAGAAATACAGTCGTGCACTGCAACG 955 29 100.0 32 ............................. AAGAAGCAGAAATACAGTCGTGCACTGCAACG 894 29 96.6 32 ............................C TACTTAAAGGCGGCTAAAAAGCAAGTAGTTGA 833 29 100.0 32 ............................. CCACCGTCGATGGTGGTAGCTCACGGCCATTA 772 29 100.0 32 ............................. CTCATCGATCCAGTCAAATTGGCCGTCGATTA 711 29 100.0 32 ............................. ATATGTACAAACAAAAAGGGGTGAGGACAATG 650 29 96.6 32 ............................C ATCATCTTCCACCACAATGTAATCCATAGCAT 589 29 96.6 32 ............................C CTAATCCCATTCAAAGTTCAAATTCCTGAAAA 528 29 100.0 32 ............................. ACCTTAGGCCTTCTCAAGTCACACCTTTTCTT 467 29 100.0 32 ............................. CGGTGGTAGCTTGGCTCAAAACGCTGCCGACG 406 29 100.0 32 ............................. CAGCTTACAAACATCACGGATGATCCCCGCAT 345 29 96.6 32 ............................C CGTTAACTCAATGATCAACAAAGAAATTAGGA 284 29 100.0 32 ............................. TCTACCAGGTAATCGAACCACTGGTCCCCAGT 223 29 96.6 32 ............................C GTTAACGAGATGTTTAAGACCGTCACGATTAG 162 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 34 29 98.3 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACAGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAACAGTGGTTGGTTATAATGTTGTATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCATGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGTTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TTTTTTTGTGGGACGAATTTACAATTGAAGTGCAACAAGTAAGAAGAAAATAAAAAAGAACTCATAGCCTGAGTCCTGTAAAATGAAGTCACCACAACAAACATCTAAAGGAGATCTTAGGCTATGAGTTCGTA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28249-29078 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAZV01000022.1 Limosilactobacillus fermentum strain DS19_7 DS19_7_22_length_29274_cov_37.975641, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28249 36 100.0 30 .................................... TTTAAGGGTTCACTTTATCAAGCCGTGCCT 28315 36 100.0 30 .................................... AAGGAGGAGCAACATGATTGAACTCACACC 28381 36 100.0 30 .................................... TCCAAAGGGCGACCGAGCAGGCAAGAGATC 28447 36 100.0 30 .................................... GCTTCAGACAAGTCCTCGAAATCAAGTCTT 28513 36 100.0 30 .................................... TTTCTTTGAAGTCAGCTAGATCAAGATTAA 28579 36 100.0 30 .................................... TCAGATGTAATAGCAGTGAAGTCAAGATCA 28645 36 100.0 30 .................................... TCAGATGTAATAGCAGTGAAGTCAAGATCA 28711 36 100.0 30 .................................... CGTTCCTGGTCACTATACCGGATGAACATA 28777 36 100.0 30 .................................... TCAGATGTAATAGCAGTGAAGTCAAGATCA 28843 36 100.0 30 .................................... ATTGCGCCAGAATTAATTGTTGTTTATGCT 28909 36 100.0 30 .................................... GTGAACCTATTAAAGAGTTGGTTAGCTTAT 28975 36 97.2 30 .............................T...... TGATCAAGTTTCAAACTATGAAAACTTCGG 29041 36 80.6 0 .........................AG...A.AATG | G,C [29063,29066] ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.3 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGTTACCAAACGGCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTACTCAGAGATGCAAGATTCTTTGTTCGAATTTGACTTGCCATTGGAGGTGCGGTATGACGAAAGTCTTTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACCCAAACAGGATATTTATCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAAAG # Right flank : TTGGTGTAAATTGAATTCCGCGAATTTATCATTTCACAAGCTTAAGCATACCGGCTTCTTCTGAATTGCCATCTTTTTCAATCCCGTGGTAAACGGTCATGTTTAAGTACCGTGGACCAGCAGCCCATTTTTCATTCTGTTCAATCAGTAGTGCTCCCATTAGTCGCAAGACGCTTAGATCATTCGGGAATATCCG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //