Array 1 524235-523936 **** Predicted by CRISPRDetect 2.4 *** >NC_009486.1 Thermotoga petrophila RKU-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 524234 30 93.3 37 .G..................G......... CTCTACCACGTTGCTTGGAAGAAGCGGAAGGTACTCC 524167 30 100.0 39 .............................. CGGTTGGTACCTTGTCTGTTTCTACGATTTTGACTACGG 524098 30 100.0 37 .............................. ATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCG 524031 30 100.0 36 .............................. AGACTTGGATTCACGTATTGTTTAATCTGCTGAAGC 523965 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 98.7 38 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CTTCGGCATGTGAAGGGCCGGAGAGGACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGATACTCTTTTACCTGTTTTGATCTCTATTCCCTTTGAAAGATTCAACACCATGAAAGGTTTCACAGGTAGTCTCAGAAGATACTCTCTTATGTACTGAACGGGAATCGCTATAACGAGAATGTCTTCTTTTTTGAGCTCATCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACATTTATGAGATCGACGATCTCTTTCCTTCTTGCCCAGAGAACTACTTCTTCTCCGTTTTCATGCAGCATCTGTGCAAAAACTGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCGAAGATAGAATTCCCCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCGTGAAATAGTGCTCTCATATCTCACGGAATCGGGT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTAGGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAATGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAATGCCAAGTACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 536387-537215 **** Predicted by CRISPRDetect 2.4 *** >NC_009486.1 Thermotoga petrophila RKU-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 536387 30 93.3 35 ......G.............G......... TACTCAGGGATCCAGCAAAATACCTTCCGTTAGCC 536452 30 100.0 37 .............................. CTGGTGAGGTTGATGGGGCTTTTGACTTCTTCGGTGT 536519 30 100.0 39 .............................. GCGGGATTATCCGGCGGGCTTTTGGTGTGCTTTAAAAAT 536588 30 100.0 36 .............................. AACTTCATACTCACCGACTACTGCATCAAAAGAAGT 536654 30 100.0 36 .............................. CGCTCGGCGGCGTAGGCTGGGCTGTGGCAGTATTCT 536720 30 100.0 36 .............................. TCGGTTTGTGCACTATCACTTCTCCGCTTGAGAGCG 536786 30 100.0 36 .............................. GCTCCTCGAAAAGTATCCTGTCCACGTGGAGATTTA 536852 30 100.0 38 .............................. CCGTCTGCTTCAACAGCGATTATTGCGAACGTATCTTT 536920 30 100.0 34 .............................. CTTTTATCATACCTCATTTTTCCGGATTGTCAAT 536984 30 100.0 37 .............................. TGAACGCTGAGAACGATGTTGCAACGAGGTTCAACCT 537051 30 100.0 37 .............................. ATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCG 537118 30 100.0 38 .............................. AATAGAGAAATCATATCGTATGCTCCCGCATTGTGCCC 537186 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 99.5 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TTTTCTCTATGTTTTCAAGAGAAAACAATCCCATCACTTCTTTGAGATCCAATCCCGTTCCGTACAGCCCGCGGAACAATTTGAGGGTTTCCCAAACGGTGAGGTTTTCAAAAAAGGCACTTTTCTGGAGACACACACCAATTTTTCTCTTCGTTTCTCTATCTAAGACATCCTTTCTCTCACCGAAATAGTAGATCTCCCCGGAGTCTTTCTTTCTGAGACTTTCGAGTATCTCAACGGTCGTGGTTTTTCCCGCACCGTTGGGTCCAAGGAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCCACGGCCTTCACGTCACCGTAGTGTTTCTTCAGATCAACGACTTTCAAAATCTCCAGAAAAAATCCCCCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTGAGCTTAGCGGAGATCATCGATACAAGACAA # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGAGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCGTATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGACCTTCCAATGCCAGGTACACGCATCACCTACTTTGTGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 3 568240-568733 **** Predicted by CRISPRDetect 2.4 *** >NC_009486.1 Thermotoga petrophila RKU-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 568240 30 90.0 35 A.......G...........G......... TTAAGATGTCTATACCGGGCATTCTACAAAACAGC 568305 30 96.7 36 ....................T......... GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT 568371 30 100.0 38 .............................. GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA 568439 30 100.0 36 .............................. TATGTGTTTATCTCCTCATCTTGCATGTCTCTGTCA 568505 30 100.0 37 .............................. ATATCACACATTTCACTGTGTGTCAATAACGAAAAAG 568572 30 100.0 36 .............................. ATTGCGAGAGATCAGAAATATTCTCCGCTTTGTAAA 568638 30 100.0 36 .............................. TAAAGGATATGAGATACTCACTACTGAGAAATCATT 568704 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 98.3 36 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CCATCTTGAACGTGGTCTCTGAGAGTGTGTCTATCATCAACCTTGTTCTCGTTGCAATCACCGCTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTCTCTGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGAATTCTTTTGGAGTTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTCTGGGTATCTTAGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGATAGATCCGCTCTCTGTGATTGTTGCATTTGGAGTTTCGGCAAGCGTTGGATTGTTCTTTGGGTTCTATCCCGCATACAGGGCCTCCAGACTGAGTCCAATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGGAAACACAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTGTTTTGTATCAG # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAAAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTTAGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTAATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 4 940034-941261 **** Predicted by CRISPRDetect 2.4 *** >NC_009486.1 Thermotoga petrophila RKU-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 940034 30 83.3 35 T...T.G...A.........G......... AAACTATTAGATTTTCTTAGCGAAAGAATGTCTTA 940099 30 96.7 35 ....................G......... AACAACATTTATGAATACAAGATCGTCGTCCAACT 940164 30 100.0 37 .............................. TGAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTA 940231 30 96.7 36 ....................G......... AGGTGTTTGACAACACGAAACAATGGGAAGACATCA 940297 30 100.0 37 .............................. AGGAAGTCGTGTTCACAAATCCGGACGTAAAAGTGCT 940364 30 96.7 37 ....................C......... AAGAGAAATTAGAAGAAGAAGCGAAGGCGTTTTTAGA 940431 30 96.7 36 ....................C......... TTTGCGAACGTACGAGATTTTTTTCACATATCATAA 940497 30 96.7 37 ....................C......... AGGCCATCAAGTTTGACGGCCCTGTTGGAGTCATATT 940564 30 96.7 36 ....................C......... AAATTAGAGGCAAAGAGGTTGTAATGGATGAATGGT 940630 30 96.7 37 ....................C......... TGAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTG 940697 30 100.0 37 .............................. AGGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCC 940764 30 100.0 37 .............................. AAAAGCTGGTGGTACTCGAAGCCCTTCGTAGGCTTTT 940831 30 100.0 36 .............................. TGAGAAGAGAATACGCAATATTAGTATGGCTTGAAG 940897 30 100.0 39 .............................. CATACTCCAACGCAAAATAATATGTTCTATTTCTCAAAA 940966 30 100.0 36 .............................. AAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT 941032 30 100.0 36 .............................. ACGAAAACGTGTTGAGGTTTCGAGTATCGAGGCGCA 941098 30 100.0 36 .............................. CCGCCACGCATCCGGCTGCCGTAGGCGATTGGTTGG 941164 30 100.0 38 .............................. GTGGTCTACTACAGCACATGGATGCAGGAGGATGAAAT 941232 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 97.9 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : GGTCTTCATAGACACAAAGAACAGATCTGACAGATTTGAAAGGCAAAGGAAAGACTCTCCCTCGAGAGAGAATCCATTAGAAGCACAGATCGTGAAAGAGGTTGTGGAAAAGCTTCTCTCCATGGGGGTGAAGGAGGATTGGATCGGGATCATCACTCCCTACGATGATCAGGTGAATCTCATAAGAGAGTTGATCGAAGCGAAAGTAGAAGTACACAGTGTGGATGGTTTTCAGGGAAGGGAAAAAGAGGTCATCATCATCTCATTTGTGCGTTCGAACAAAAACGGTGAAATAGGGTTCCTCGAAGATCTGAGAAGACTCAACGTCTCACTCACACGGGCGAAAAGAAAACTGATAGCAACGGGAGATTCGAGCACGCTCTCTGTCCATCCAACTTACAGAAGGTTCGTAGAGTTCGTGAAAAAGAAGGGAACTTACGTGATCTTTTGATATGAGAGTCTATAACAAAAACATCCCCCCACTCATGTGGGGGTTATTT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGATGATAAATTATATCAACCTACGTCAGGGCATTTTGGGATGTTTTTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCTAATTAAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATAAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACGCATCACCCACTTTGTGA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 5 1110145-1107492 **** Predicted by CRISPRDetect 2.4 *** >NC_009486.1 Thermotoga petrophila RKU-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1110144 29 100.0 38 ............................. TATCCTTGTATGTCATAACGTTTCGAAATTTTGTTATC 1110077 29 100.0 37 ............................. AACTAATCACCGCACTAATGTACGCAGAGTCAAAGTA 1110011 29 100.0 38 ............................. GACAATATACGAGAGGAATATCACGAAAGAAGAGTAGT 1109944 29 100.0 35 ............................. GCGTCAATTAAATAGGGGTATTTGTACAGCGTCGC 1109880 29 100.0 36 ............................. CCGTCCCACACCTATTAACCAACCCTTTCCAATACC 1109815 29 100.0 36 ............................. GATATCCTACTGCGACTTTGTATGCGAGTGTGAGGT 1109750 29 100.0 37 ............................. GCGTCACGTCCTTTGCGGTGGAGATAGGGACAACAAA 1109684 29 100.0 37 ............................. TTATTGAGTATAAAATCTTCTTCAGTGAGATCAAAAA 1109618 29 100.0 36 ............................. CAGGCTCTCCCTCAACGATGAAGTCCTTTTCAAGTT 1109553 29 100.0 35 ............................. TTACTTTCTTCTTTTTCTTGCCCTTCTCGTTCTTC 1109489 29 100.0 35 ............................. ATGTTGAACTTGAGAGCGGGAAAGAGTTAGGACAA 1109425 29 100.0 36 ............................. GGTCGAAGAGCAAAAGATCGCCGTTCCCGCGAATCA 1109360 29 100.0 37 ............................. GATGCCACCGCCTGAAGAAGCTGTTCAAGACCTTTCA 1109294 29 100.0 36 ............................. TCGCCACAGGCCTTCCGAGAATTGTGCTGACGAACG 1109229 29 100.0 37 ............................. GCATTATAGGAATATAGCCCTTTTAGTGCTTCATCTC 1109163 29 100.0 38 ............................. TATCATCTACCTCCCCTCAGTTGTTTCCAGTCTATAAC 1109096 29 100.0 37 ............................. TTTTAGTATTTTTATTGGTGACAAAAGAGTAGTAGTT 1109030 29 100.0 36 ............................. AAAAGTGCCTAAAGTTTGTGTGATGTTGTATTTCGT 1108965 29 100.0 37 ............................. TGTCCCTGAAGTTGCAGAAATGCTGTGGTATAGATAT 1108899 29 100.0 37 ............................. TATAGATGGACACTCAGGGATGAGGAAAAAGGGTCAG 1108833 29 100.0 37 ............................. GATGCCACCGCCTGAAGAAGCTGTTCAAGACCTTTCA 1108767 29 100.0 36 ............................. TCGCCACAGGCCTTCCGAGAATTGTGCTGACGAACG 1108702 29 100.0 37 ............................. GAAGTGCGATGGTTATGAGGAGGGATAGCGATGTGGG 1108636 29 100.0 37 ............................. GATGGTTTTTCCCGACACAACATACAAAAACGGTCAC 1108570 29 100.0 37 ............................. TCTGAAAATACAACAAGTTTTCCGGTGTTTGTGTCGT 1108504 29 100.0 36 ............................. AATTTGCCATACAAACTGTTCATAATGATTTTTGTG 1108439 29 100.0 36 ............................. TTGCATCTATGAAGATTTCTTCCTTGATACTTCCTC 1108374 29 100.0 37 ............................. TCATTTCGCCTCCTTCTCAAGTACACCTCTCAAGACA 1108308 29 100.0 35 ............................. GTAGAATTTTCCCGATTTGCCACGTACAGGTACTG 1108244 29 100.0 38 ............................. AAAATAGTTACAGCTAATACTTATTTCTGGAGCCCAGG 1108177 29 100.0 35 ............................. TTCCGAAGGTAGTGCTGAAGATCTTCAAATCCCTG 1108113 29 100.0 38 ............................. GTATAAGAATCCCTGTTACTTAAGCCCGCTATGTACTG 1108046 29 100.0 36 ............................. CTGATCTAGCATACAGCATAGTAGAGACACGACCTT 1107981 29 100.0 36 ............................. AGGTACAATCTATAGAGGCACGGAGGTGGGAATAAT 1107916 29 100.0 37 ............................. ATGGGAAACAGTACAGCCTTTATTTTGGACGTTTCAA 1107850 29 100.0 35 ............................. AATCACCGCTGATGCATCGTTGATGTCGCCCCCAA 1107786 29 100.0 37 ............................. AGGAGAACGTTCGGCACGCAATTTTGAGGTTTGAAAT 1107720 29 100.0 37 ............................. CCATAGACGCCGTGCCCTCCAACGGCAAACTCTACGA 1107654 29 100.0 37 ............................. TTGTTCGTGGCTAAATAAAATCTCAAAGTTCCTGTCC 1107588 29 96.6 37 ............................T GGCGTGATGTGAAAGATGGAAAGGTGAACCACTGCTA 1107522 29 82.8 0 T........C.........A.....A..T | T,T [1107497,1107505] ========== ====== ====== ====== ============================= ====================================== ================== 41 29 99.5 37 GTTTTTATCTTCCTAAGAGGAATATGAAC # Left flank : AACAAACAGTTCTTCATAGAAAGCTGAAGAGAAAGGTTAAATATCAGTCTTTCATAAGATTGGAGGCTTATAAAATAATCAAACATCTGCTCGGAGAAGATGAGTACAAGCCTTTCAAGGTTTGGTGGTAGGTGATACTAGTGAGAGTTATTCTGGTTTACGACATTTCTACTGAGACAAAAGAAGGAGTGAAACGATTAAACAGAGTAAGGAAGATAGCAAGGAGATATCTTGACCATGTTCAAAAATCGGTTTTTGAAGGAGAACTAACGGAGGGAGAAATCGAGAAACTAAAATTTGAACTACAATGCATCATTGATAATGACGAAGACTTTGTGATAATTTACAAAATGCCACCTTCTATTATGATAGAAAGAGACATTCTAACCAATACGAACGATCCAACATCGAATTTCATTTAGACAAAACCGGAGGTTTGACGCAATACTCATATAACAAATGTTCTATAATGTGTTTTTTTTACTAAAAAAATGAATGCG # Right flank : CAATAAGAATTCCCGCATCAAGCGGGGCTTTTTTCTTACACATTTTTTGAAATCTGTACTCAAGGGGGTGGATGGGATATCAAGCAAGACAAGAAGAAAAATTAAAAACGAACTTTTGTTGGAAAGAGAGTTTCTGTTAGAGGGAAAATCAAAGTGTTTGGTACCACAGGAAGTCCTTTCTCGAAAAAACAATTGTGAGTTTCGATCAAAAAAGGCACTGAAAATATGGATAAGAATTTTATAACCCTTTGAAATGCGCTTTTGAGAGTTCTTTAAGGAGGTGTTTGGTACGATGATTTTTGCTGGAGATGTCAGTACGTTTGATATGTGCAGGCGTAATCATGCGTGAGAAATTAATCTCAAAGATGTCCTGACTAAAAACGAGGGATTGTAACGCCTTCAGAAGCTAAGATGGTTGTACTTGTACGAGGTACCAGCGACTATGGCAGGTTTGGCAGTACCCGCGGCAAAAAGGGTCAAGACAGAACTCAAAACACCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTCCTAAGAGGAATATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 6 1172615-1171790 **** Predicted by CRISPRDetect 2.4 *** >NC_009486.1 Thermotoga petrophila RKU-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1172614 30 100.0 36 .............................. ATATCACCTTACAAGACAAAAACGAAGACAAAATTT 1172548 30 100.0 36 .............................. TGAGACGGGTTGTGATTGGTATCTTTTCCCACGCAG 1172482 30 100.0 35 .............................. AAGCGCTTCTCTTGCAATTTTGGTGGGGGTGGTCT 1172417 30 100.0 38 .............................. AATGAAAGCCCAGAGTAGCGGGAAAGCCCCCGAAAAAA 1172349 30 100.0 36 .............................. CGTCAAAGCCCTAGCGTGCGACCTCGTTGCTGTAGC 1172283 30 100.0 37 .............................. AAGATGCATTACAACTGTATAGAGAACTCTTACCAGG 1172216 30 100.0 36 .............................. AATTTTTGAATCAAAAGACGAGTGCGAGGGATGTTA 1172150 30 100.0 37 .............................. GGAGATGGGGAGGTGATCCTCGTTGATGAAGAAAGAG 1172083 30 100.0 37 .............................. TCACTCCTATGTTTAAGTCCAATTACATTATAGACTA 1172016 30 100.0 36 .............................. GGGGCTTGGTATCTGAAAAAGGCATATGAAATGTGG 1171950 30 100.0 35 .............................. ATAAGGTTCCGGTTCAACCCGCGCAAGGCAGGAAG 1171885 30 100.0 36 .............................. ATGCTCCGGTCCTGACGGGCGCTTTCTCCTTTGCTT 1171819 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 100.0 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : AAATAAGGAAAATTCTGAGACTCTACGATGTGGACAGTGCGGATGGTATTTTCCGGTCGAGTGATGGAAACTTCAAGGGCTACATCAGCCTGCCGGATCGTTATCTCTCCAAGAGAGAAATAAAAAAACTCTCGGCGATTTCTCCAAACACCACAGTCAACATCATAAAAAACAGCACGGTTGTTGAAAAATACAGAATAAAGCTTCCACCAACGATCTATGGATTTGAGGAACTCCGATGCAAAAACGAGAACTGCATCACCAATCCCGCACACGGCGAAAATGCTTCACCTTCCTTTGTGAGAGACGAAAAAGGACAGTTTATATGCGAGTACTGTGAAACACCGCATTCTTTCGAAGAAATCTGGAGTATTTGAGAAATCTACAAGAAAAAGAAAGCAGGGGAATTTTCCCCTGCTCTTTTTATTTTATAACCCTTTAAAAGCTTATGTGAACTTGGTTAATGTTTCTATACCTCAAATCAGGCCCGTTAGAGCCGG # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGATGATAAATTATATCAACCTACGTCAGGGCATTTTGGGATGTTTTTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCTAATTAAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATAAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAATGCCAAGTACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 7 1372744-1372310 **** Predicted by CRISPRDetect 2.4 *** >NC_009486.1 Thermotoga petrophila RKU-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1372743 30 73.3 36 T...TTG.G.T........TG......... GATGTACCACGATTGGTATGTCTCCGGCGTCGGAAT 1372677 30 100.0 36 .............................. CGCTGCGGCTTTCTACCATACACGGCTGCGAAGTAG 1372611 30 100.0 37 .............................. TCTCGGATATCAAAATGCTTGAAATTGTTGTTGATTC 1372544 30 100.0 36 .............................. CGAGAAGTTTGCAGGAGAAGTGTATAAAAAACACTT 1372478 30 100.0 43 .............................. ATGGAAACACTTAGACACTTTTCGAACGATCGGGAAAGAAATA 1372405 30 100.0 36 .............................. CTGCGAAAGCGGTTATGATGTCGTGAGAGGTGTAAA 1372339 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 7 30 96.2 38 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTCCTCGCAGAAAGTCTGAAAATATCCGGACTACTTCCCGCTCTTGCCGTTGGATTTCTCATGTCAGTTACCATTGCAAGCTTTGGTATTGCGCTTGCTTTGAAGATGGAAAGCACTGAGGGATTCCAGATGATCATGATGACTCTGATGATGCCTCTGGTCTTTCTGAGCGGTGCGATGTATCCTATCGACTCCATGCCAAGCTGGATGAAGGCTCTCGCGTACATAAATCCTCTCACCTACGCGGTGGACGCCTCGAGAGGGTACTTAGTGGGAGAAAAAGTGATGAAGTTCTCCTTCGGCCTCGATTGGGGAATTCTCTCGATCTTGATGCTGGTGGGGCTCATCCTCGCAATGGAAAGCTTCGAAAGAGCAAGGATAAGTTGAGATATCAACAGCAAAAACGAAGGCAGGGGGTTTCCCTGCCTTTTTGTTTTTTTATGGAGCTTCATTGAATATGAAATGCTAACAGAAACAACGATTTCGGAAAAGAAGAAGT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCGGGGCATTTTGAGGTGTTTTTGGTGAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAATGCCAAGTACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //