Array 1 423473-424904 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYU01000001.1 Salmonella enterica isolate STY96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 423473 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423534 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423595 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423656 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 423717 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 423778 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423839 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423900 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423961 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 424022 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 424083 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 424144 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 424205 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 424266 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 424327 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 424388 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 424450 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 424511 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 424572 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 424633 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 424694 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 424755 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424816 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424877 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441036-442878 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYU01000001.1 Salmonella enterica isolate STY96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 441036 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 441097 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 441158 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 441219 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 441280 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 441342 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 441403 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 441464 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 441525 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 441586 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 441647 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 441708 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 441769 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 441830 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 441891 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 441952 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 442013 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 442074 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 442135 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 442197 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 442300 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 442361 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 442422 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 442483 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 442544 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 442605 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 442666 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 442727 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 442788 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 442849 29 96.6 0 A............................ | A [442875] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //