Array 1 2180241-2178747 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029185.2 Limnobaculum parvum strain HYN0051 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2180240 29 100.0 32 ............................. TCACATGCCGATATTTTAGCTCTGGCCCCAAC 2180179 29 100.0 32 ............................. ATCGCGAACAACGGCTGCTGGGTGAAAAACTG 2180118 29 100.0 32 ............................. CCGGTATGACAGATTTACGAGAGACGTCCGAT 2180057 29 100.0 32 ............................. CATCCACTACATGGATCATATCAGCAGTATTC 2179996 29 100.0 32 ............................. CCAAAATAACAGCATAAAAATTTCGCATGCGA 2179935 29 100.0 32 ............................. ACATTAGCGAGGACACCCGCCTAACCTGGGCT 2179874 29 100.0 32 ............................. GATGGATACCACTTCGGTCCTGCATGGTCCGA 2179813 29 100.0 32 ............................. GAATATGTGCTCATGACTTCTAACAAACCGGT 2179752 29 96.6 32 ............................C AGCGCATCTCGCTGCAATCTTATCGTTTTGTA 2179691 29 100.0 32 ............................. CGTGTTGATTCAGGCCCCGACTGGGGCAGGGA 2179630 29 100.0 32 ............................. GAGGCTTCTGACCGGTTCCGTGAGCTTGAACG 2179569 29 100.0 32 ............................. CCGTCAACCAGAACGGCGGGAGGGCAGGCGTC 2179508 29 100.0 32 ............................. ACGATGGCCCACGCGATTGATTATCCACTCAC 2179447 29 100.0 32 ............................. GTATCACGGAAATTACTCCCTATTCTGGCCGG 2179386 29 100.0 32 ............................. CAATAACCCTCTGGCTCTGGACGCTCAGACAG 2179325 29 100.0 32 ............................. AACATCCGCCACTACCGGTACAGGCCGAGGCA 2179264 29 100.0 32 ............................. CTGGCTGTCATCTCAAACATGACATTTTTCTC 2179203 29 100.0 32 ............................. ATTGGGCGAGCACTATCAGGATGAGTAATAGC 2179142 29 100.0 32 ............................. ATGATTATTTAAAACATGAGAAAAAGTTACTG 2179081 29 100.0 32 ............................. GCGGCTATTTGAATCGTGATTACTGAAAGCAG 2179020 29 100.0 32 ............................. CAGGCCTCGTTATTGCTGTTTCTGGTTTTGGT 2178959 29 100.0 32 ............................. GTCGTCGACCGCCCCCTCATCCATGATTGTCT 2178898 29 100.0 32 ............................. TATGCTGAATCAGCAGTACGGAAATCAGTTGA 2178837 29 100.0 33 ............................. TGATGAGGGACTATTAAATGATTCGATGCGTTC 2178775 29 79.3 0 .............T..TA........TAA | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 32 ATGTTCTCCGCGCCAGCGGAGATAAACCG # Left flank : TTGATTGAGGAGGTTCTATCCGCAGGTGAAATCCCATTACCTGAACCTTTTGTTGATGCTCAACCTCCAGCAATACCTGAACCAGAATCATTAAGTGATGTGGGATACAGGAGTAAGGGATAATGTCGATGTTAGTGGTAGTGACTGAAGCGGTTCCTCAACGACTGAGAGGGAGGCTTGCTATTTGGTTACTTGAGGTGCGAGCAGGTGTTTATATTGGCAATACCTCGCGTAAGGTCAGGGAGATGATTTGGCAGCAAATTATACATCTTGCTGACGAAGGCAATGTGGTTATGGGATGGGCGACAAATACGGAGTCAGGATTTGACTTTCAAACATGGGGTGATAACCGCCGTATTCCGGTAGATCTGGATGGATTAAGGTTAGTCTCATTTCTACCCATTTAAAATCAATTGGTTATGGTTCTTTAAAAATATAAAAAAGTTGGTGGATATTTTAGTGCTATAAATGTCATTATAAAACAGTTAGCTATATTTAGT # Right flank : CATAGTCAATAACCCACAACAAAATACATCAACATAATCTTCGCCATAGGCTTGTTTGCGCGTATCCGATTGTTGTAGGCTGTAATATTGTTGTTTGATTAGACACCGAGCGGGTAAAAATGAACTACCAAAATGACGATATAAGAATAAAAGAGATTAATGAGCTGTTACCTCCGGTTGCGTTGCTGGAGAAGTATCCTGCTACGGAGAAAGCGGCGTTGACGGTCGCGGCTTCCCGCGAGGCGATTCATAATATTCTGGTGGGTGAAGACGATCGTCTGCTAGTGGTGATTGGGCCTTGTTCTATTCATGATGTTGATGCAGCCCTTGAGTATTCTCGCCGTCTGGCCGAGGTGCGTAAGCGCCTTGATAAAGACCTAGAAATCGTTATGCGGGTCTACTTTGAAAAACCGCGTACTACCGTGGGTTGGAAAGGGCTGATTAACGATCCTAATCTGGATAACAGCTATCAAATTAATGATGGTTTACGCATTGCACGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCTCCGCGCCAGCGGAGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATGTTCCCCGCGCCAGCGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //