Array 1 3293128-3290597 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN890518.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462388 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3293127 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 3293066 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 3293005 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 3292944 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 3292883 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 3292822 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 3292761 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 3292700 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 3292639 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 3292578 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 3292517 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 3292456 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 3292395 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 3292334 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 3292273 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 3292212 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 3292151 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 3292090 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 3292029 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 3291968 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 3291907 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 3291846 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 3291785 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 3291724 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 3291663 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 3291602 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 3291541 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 3291480 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 3291419 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 3291358 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 3291297 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 3291236 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 3291175 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 3291114 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 3291053 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 3290992 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 3290931 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 3290870 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 3290809 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 3290748 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3290687 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 3290626 29 93.1 0 A...........T................ | A [3290599] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3311250-3309635 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN890518.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462388 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3311249 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 3311188 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 3311127 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 3311066 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 3311005 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 3310944 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 3310883 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 3310822 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 3310761 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 3310700 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 3310639 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 3310578 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 3310517 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 3310456 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 3310395 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 3310334 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 3310273 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 3310212 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 3310151 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 3310089 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 3310028 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 3309967 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 3309906 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 3309845 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 3309784 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 3309723 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 3309662 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //